Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120585.Seq
(824 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g01640.1 68417.m00213 hypothetical protein 30 2.1
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con... 30 2.1
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 29 3.7
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 29 3.7
At5g19720.1 68418.m02345 tRNA synthetase class I (E and Q) famil... 28 6.5
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 8.7
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila... 28 8.7
At2g19190.1 68415.m02239 light-responsive receptor protein kinas... 28 8.7
>At4g01640.1 68417.m00213 hypothetical protein
Length = 300
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 368 HSVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWAGVYGID 234
+S REL + N LD+ L E QV W DH W +Y ID
Sbjct: 185 YSSRELIMCN-LDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSID 228
>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
contains Pfam PF00646: F-box domain; contains weak hit
to TIGRFAM TIGR01640 : F-box protein interaction domain;
weakly similar to self-incompatibility (S-) locus F-box
(GI:29420811) [Prunus mume]
Length = 391
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 368 HSVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWAGVYGID 234
+S REL + N LD+ L E QV W DH W +Y ID
Sbjct: 276 YSSRELIMCN-LDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSID 319
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 690 ECSSWGLLG-LAITSCAMSAMRLASCAVSRRASFNIVLACTNPA 562
+ ++W G L AM A++ S A+ R+ ++VLAC N A
Sbjct: 9 DVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKA 52
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 690 ECSSWGLLG-LAITSCAMSAMRLASCAVSRRASFNIVLACTNPA 562
+ ++W G L AM A++ S A+ R+ ++VLAC N A
Sbjct: 9 DVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKA 52
>At5g19720.1 68418.m02345 tRNA synthetase class I (E and Q) family
protein similar to tRNA-glutamine synthetase [Lupinus
luteus] GI:2995455; contains Pfam profile PF03950: tRNA
synthetases class I (E and Q), anti-codon binding domain
Length = 170
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 323 LLGDEHCVRLQVQWVTLLDHVVWAGVYGIDPDSLYVVLYFLSTLTI 186
L E+ L W+T ++ + +G Y +D DS+ L F T+T+
Sbjct: 116 LFNSENPAELNDDWLTDINPQLQSGYYTVDKDSIPGKLVFNRTVTL 161
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 536 LNNAL-VTANAGLVQANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSLAVCALG 712
L NAL ++++ G++ N + + RR+ + A R I D NP+L + A AL
Sbjct: 17 LTNALSISSDGGVLSDNEVRHIQRRQLLEFAERSVKITVDPSLNFENPRLRN--AYIALQ 74
Query: 713 GEKYAFL 733
K A L
Sbjct: 75 AWKQAIL 81
>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
to SP|P36175 O-sialoglycoprotein endopeptidase (EC
3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
contains Pfam profile PF00814: Glycoprotease family
Length = 480
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 237 YTIYPGPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLP 359
+ +YPG + + + L LQ H L TK LI S P
Sbjct: 15 FNLYPGISILARNNNSLRLQKHHKLKTKTPTFSLISPSSSP 55
>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
senescence-responsive receptor-like serine/threonine
kinase, putative (SIRK) similar to light repressible
receptor protein kinase [Arabidopsis thaliana]
gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
Protein kinase domain and PF00560: Leucine Rich Repeat
Length = 876
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +3
Query: 210 QNDVQRVGVY---TIYPGPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLPYAVEL-Q 377
++DV +GV I P + + +++ H I G I+ I+ +L ++
Sbjct: 754 KSDVYSLGVVLLEVITGQPAIASSKTEKVHISDHVRSILANGDIRGIVDQRLRERYDVGS 813
Query: 378 AWLLEEVIPQCCARASTRRPSRWTQIMV*LK 470
AW + E+ C S +RP+ +Q+++ LK
Sbjct: 814 AWKMSEIALACTEHTSAQRPT-MSQVVMELK 843
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,701,967
Number of Sequences: 28952
Number of extensions: 371319
Number of successful extensions: 932
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -