Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120584X.Seq
         (544 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BTE3 Cluster: Chromosome undetermined scaffold_127, w...    33   3.2  
UniRef50_A0DX06 Cluster: Chromosome undetermined scaffold_68, wh...    32   9.8  

>UniRef50_A0BTE3 Cluster: Chromosome undetermined scaffold_127, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_127, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1308

 Score = 33.5 bits (73), Expect = 3.2
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 488  TIDGTFEKFLYNLITFSNSFDIWINANDGLLL-KYLLRYTDSNDDNKMKQ*ELV 330
            +ID TF+    NLI  S   DI +   D  L+ KYL+ +   N+D ++ Q +LV
Sbjct: 976  SIDNTFKVDKENLIISSKLIDIALFGQDMFLIEKYLIAFYQCNEDFRLNQCKLV 1029


>UniRef50_A0DX06 Cluster: Chromosome undetermined scaffold_68, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_68,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 542

 Score = 31.9 bits (69), Expect = 9.8
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = +1

Query: 244 SITFNFFR*ITFKVQLDTYKQNIHFFVSKTSSHCFILLSSLLSV*RNKYFKRSPSLAFIQ 423
           SIT +F +   F++    + QNI   +SK   HC   L     V  N + +    L  I 
Sbjct: 338 SITVSFLKKQLFQLSNLKFNQNIQQQISKLKLHCMYFLGQFKQV--NSFAEVDFHLKDIN 395

Query: 424 MSKEFENVIRLYKN 465
           MSK  + +  L+ N
Sbjct: 396 MSKLMKQITYLFCN 409


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 441,216,604
Number of Sequences: 1657284
Number of extensions: 7651065
Number of successful extensions: 18717
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18714
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)