Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120584X.Seq
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0107 + 4354470-4354589,4355058-4355156,4355292-4355596,435...    28   4.2  
04_01_0401 - 5260308-5260361,5260457-5260507,5260764-5260809,526...    27   7.3  
03_02_0453 + 8621605-8623332                                           27   7.3  

>09_02_0107 +
           4354470-4354589,4355058-4355156,4355292-4355596,
           4356101-4356278,4356368-4356481,4356543-4356674,
           4356784-4356888
          Length = 350

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +1

Query: 298 YKQNIHFFVSKTSSHCFILLSSLLSV*RNKYFKRSPSL---AFIQMSKEFENVIRLYKNF 468
           Y  +   F      H F+ L S+     NKY K+   L     I M +EF NV    KNF
Sbjct: 279 YDNHWFVFTVDIKGHHFVFLDSIYDE-NNKYHKKIQGLLIPGLIAMWEEFSNV---EKNF 334

Query: 469 SK 474
           SK
Sbjct: 335 SK 336


>04_01_0401 -
           5260308-5260361,5260457-5260507,5260764-5260809,
           5260884-5260933,5261019-5261062,5261231-5261310,
           5261391-5261461,5261636-5261725,5262367-5262498,
           5263420-5263470,5263615-5263704,5263841-5263878,
           5265882-5266002,5267653-5267960,5268742-5268820,
           5270019-5270113,5270288-5270428,5270792-5270831
          Length = 526

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 242 YPLHLIFLDELPLKFNWILTNKIYI 316
           Y LH + L++L   +NWILT K++I
Sbjct: 217 YSLHQV-LEDLRTIWNWILTEKLHI 240


>03_02_0453 + 8621605-8623332
          Length = 575

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 478 PSIVGAHLSRALRGSPSNGRCG 543
           P+I GA +SRA RG    GRCG
Sbjct: 446 PNIAGA-VSRAYRGVDGEGRCG 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,140,323
Number of Sequences: 37544
Number of extensions: 181675
Number of successful extensions: 404
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)