Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120584X.Seq
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 29   2.5  
SB_18105| Best HMM Match : RRS1 (HMM E-Value=7.1)                      28   5.7  
SB_52272| Best HMM Match : Urotensin_II (HMM E-Value=8.3)              27   7.5  
SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  

>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1855

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -3

Query: 512 SALLKCAPTIDGTFEKFLYNLITFSNSFDIWINANDGLLLKYLLRYTDSNDDNKMKQ*EL 333
           SALL C  +     ++ L+NL+ F +    +   N G+LL+ L  Y+ + +   + Q  L
Sbjct: 583 SALLDCTNSWYVNMDRKLFNLVVFLDLKKAFDTVNHGVLLRKLEMYSITGNALLLLQSYL 642

Query: 332 VLLTKKC 312
               +KC
Sbjct: 643 TNRKQKC 649


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 455 NLITFSNSFDIWINANDGLLLKYLLRYTDSNDD 357
           N  T ++S   WI  N G L  YL+ Y D N D
Sbjct: 605 NSTTITSSGSTWIKGNHGNLGFYLVNYEDDNWD 637


>SB_18105| Best HMM Match : RRS1 (HMM E-Value=7.1)
          Length = 147

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 538 TVHLTVTLEVPCSSARLRST-ELSRNSCTILSRF 440
           TVHLT ++E P    RLR+T   SR  C   S F
Sbjct: 10  TVHLTTSVEKPAVLNRLRTTRSSSRKPCQSRSGF 43


>SB_52272| Best HMM Match : Urotensin_II (HMM E-Value=8.3)
          Length = 122

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 527 DGDPRSALLKCAPTIDGTFEKFLYNLITFSNSFDIWINANDGLLLKYLLRYTD 369
           +G+ ++   +   ++D  FE+  Y+LI    SFD W +  DG   + L+  TD
Sbjct: 61  EGERKTFFRENVASLDVYFEELSYDLIEQKPSFDRW-SLIDGQTYEELVSNTD 112


>SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1082

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 491 PTIDGTFEKFLYNLITFSNSFDIWINANDGLLLKYLLRYTDSNDD 357
           P ID   ++FL N  TF + FDI  N     + K+ L+++ S  D
Sbjct: 305 PQIDRAVKRFLKNRTTFPDIFDI-RNLVSNAVKKHKLKFSASVQD 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,976,067
Number of Sequences: 59808
Number of extensions: 239832
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)