Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120584X.Seq
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.      30   0.94 
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    30   0.94 
AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical ...    30   0.94 
U97007-7|AAB52292.1|  441|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z54271-4|CAA91034.1|  259|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF024490-2|AAB70309.1|  338|Caenorhabditis elegans Hypothetical ...    27   8.7  

>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 399 KSVISIYPNVKRVRKRDKIVQEFLESSVDRRRALEQGTSR 518
           K V++ + NVK+ RKR+K V+   +    +++A ++G S+
Sbjct: 286 KEVMTSFRNVKKTRKREKNVERAKKMISKKKKAKKEGRSK 325


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 399 KSVISIYPNVKRVRKRDKIVQEFLESSVDRRRALEQGTSR 518
           K V++ + NVK+ RKR+K V+   +    +++A ++G S+
Sbjct: 286 KEVMTSFRNVKKTRKREKNVERAKKMISKKKKAKKEGRSK 325


>AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical
           protein T28B4.2 protein.
          Length = 260

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 277 FKVQLDTYKQNIHFFVSKTSSHCFILLSSLLSV*RNKYFKRSP--SLAFIQMSKEFENVI 450
           F +  D Y+ ++H+    T++  F  L +  +V R  Y+  SP   LA   ++  F++ +
Sbjct: 69  FNLFCDVYEISLHYTTEPTNAEFFFSLRNCKTVMRTIYYVISPFQLLALCSLNPHFQSSM 128

Query: 451 RLYKNFSKVPSIV 489
             Y N ++  ++V
Sbjct: 129 IRYLNGTETFNVV 141


>U97007-7|AAB52292.1|  441|Caenorhabditis elegans Hypothetical
           protein ZC196.3 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 397 RSPSLAFIQMSKEFENVIRLYKNFSKVPS 483
           + P   F++  ++F+NV R +K F ++PS
Sbjct: 268 KQPIKRFLEYFRDFQNVAREWKYFKRLPS 296


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 500 KCAPTIDGTFEKFLYNLITFSNSFDIWINANDG---LLLKYLLR 378
           KCA  +    EKF  N    S   D+W   +DG   +LL +LLR
Sbjct: 697 KCAIMVPKYAEKFPANGTKVSGFIDVWWVVHDGGLLMLLPFLLR 740


>Z54271-4|CAA91034.1|  259|Caenorhabditis elegans Hypothetical
           protein F21D5.4 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 515 RSALLKCAPTIDGTFEKFL-YNLITFSNSFDIWINANDGLLLKYLLRYTDSNDDNKMK 345
           RS+  K   T DGT +K L  +L    NS D W N ++G +  +L  +   N +  +K
Sbjct: 143 RSSSPKTPSTSDGTTDKTLEESLFELINS-DEWKNISEGNVSGFLEDFNAENGETSLK 199


>AF024490-2|AAB70309.1|  338|Caenorhabditis elegans Hypothetical
           protein C02H6.2 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 515 RSALLKCAPTIDGTFEKFLYNLITFSNSFD 426
           + AL K +  + GTFE F+YN    ++ FD
Sbjct: 272 KKALRKPSKFVSGTFEIFIYNPAEVASVFD 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,913,285
Number of Sequences: 27780
Number of extensions: 202596
Number of successful extensions: 487
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)