Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120584X.Seq
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.1  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 300 VSIQLNFKGNSSKKIKCNGY 241
           +S   N+  N+ KK+ CN Y
Sbjct: 85  LSNNYNYNNNNYKKLYCNNY 104


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 300 VSIQLNFKGNSSKKIKCNGY 241
           +S   N+  N+ KK+ CN Y
Sbjct: 85  LSNNYNYNNNNYKKLYCNNY 104


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 300 VSIQLNFKGNSSKKIKCNGY 241
           +S   N+  N+ KK+ CN Y
Sbjct: 85  LSNNYNYNNNNYKKLYCNNY 104


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 287 NWILTNKIYIF 319
           NWI+TN   IF
Sbjct: 32  NWIITNSFIIF 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,969
Number of Sequences: 438
Number of extensions: 2603
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)