Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120584X.Seq
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03250.1 68416.m00321 UTP--glucose-1-phosphate uridylyltransf...    29   2.7  
At5g46220.1 68418.m05688 expressed protein contains Pfam profile...    28   4.6  
At2g27340.2 68415.m03287 hypothetical protein                          28   4.6  
At2g27340.1 68415.m03288 hypothetical protein                          28   4.6  
At4g29370.1 68417.m04196 kelch repeat-containing F-box family pr...    27   8.1  
At4g19900.1 68417.m02916 glycosyl transferase-related contains P...    27   8.1  

>At3g03250.1 68416.m00321 UTP--glucose-1-phosphate
           uridylyltransferase, putative / UDP-glucose
           pyrophosphorylase, putative / UGPase, putative strong
           similarity to SP|P19595 UTP--glucose-1-phosphate
           uridylyltransferase (EC 2.7.7.9) (UDP-glucose
           pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
           contains Pfam profile PF01704: UTP--glucose-1-phosphate
           uridylyltransferase
          Length = 469

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +1

Query: 316 FFVSKTSSHCFILLSSLLS-----V*RNKYFKRSPSLAFIQMSKEFENVIRLYKNFSKVP 480
           F   K SS   ++ S L +     V RNK  + +PS   I++  EF+ V      F  +P
Sbjct: 356 FLPVKASSDLLLVQSDLYTLVDGFVTRNKA-RTNPSNPSIELGPEFKKVATFLSRFKSIP 414

Query: 481 SIV 489
           SIV
Sbjct: 415 SIV 417


>At5g46220.1 68418.m05688 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616)
          Length = 465

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 515 RSALLKCAPTIDGTFEKFLYNLITFSNSFDIWINANDGLLLKYLL 381
           +S  L   P ++G   K+L + +  ++ F IW++A   L++  LL
Sbjct: 233 KSENLYLNPAMNGVIPKYLIHRLFPNSKFSIWVDAKIQLMIDPLL 277


>At2g27340.2 68415.m03287 hypothetical protein
          Length = 258

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -3

Query: 464 FLYNLITFSNSFDIWINANDGLLLKYLLRYTDSNDDNKMKQ*ELVLL 324
           +++ +ITF N + +W + N   + + +L++  +N    +K  ELV L
Sbjct: 136 YIHTIITFDN-YGVWGHCNHRDVHRGVLKFLQTNSGRNVKAWELVSL 181


>At2g27340.1 68415.m03288 hypothetical protein
          Length = 218

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -3

Query: 464 FLYNLITFSNSFDIWINANDGLLLKYLLRYTDSNDDNKMKQ*ELVLL 324
           +++ +ITF N + +W + N   + + +L++  +N    +K  ELV L
Sbjct: 96  YIHTIITFDN-YGVWGHCNHRDVHRGVLKFLQTNSGRNVKAWELVSL 141


>At4g29370.1 68417.m04196 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 378

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 395 LKYLLRYTDSNDDNKMKQ*ELV 330
           LKYL RY+ +++DN+ +  ELV
Sbjct: 291 LKYLKRYSSASNDNRNRMVELV 312


>At4g19900.1 68417.m02916 glycosyl transferase-related contains Pfam
            profiles PF01535: PPR repeat, PF04572: Alpha
            1,4-glycosyltransferase conserved region, PF04488:
            Glycosyltransferase sugar-binding region containing DXD
            motif; several hypothetical proteins - Arabidopsis
            thaliana
          Length = 1302

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 262  FR*ITFKVQLDTYKQNIHFFVSKTSSHC 345
            FR     V+ DTYK N+H + S    +C
Sbjct: 943  FRLFLKLVRSDTYKPNVHTYTSMIGGYC 970


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,690,371
Number of Sequences: 28952
Number of extensions: 166769
Number of successful extensions: 390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)