Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120583.Seq
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89...    31   1.00 
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076...    27   9.3  
03_06_0629 + 35187318-35187320,35187424-35187534,35188089-351881...    27   9.3  

>04_01_0082 +
           897026-897028,897101-897350,898454-898608,898686-898967,
           899078-899160,899335-899485,899896-899952,900279-900479
          Length = 393

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 414 KNETCQMQQSSNGHRNCKQR*KDPKNLRIGRIDLKNLSSLESYETLK-IKLALSK 575
           +N   Q QQ ++ HR  +Q+ ++P      RI +KNL +  + +  K +K   SK
Sbjct: 249 RNAKQQQQQPADAHRKQQQQKQEPSESSSERITMKNLPNPSNQDQRKTLKFGFSK 303


>09_06_0309 -
           22206812-22206884,22207008-22207103,22207531-22207619,
           22207738-22207820,22207932-22208048,22208132-22208319,
           22208430-22208500,22208570-22208782,22210022-22210081,
           22210186-22210476,22210590-22211894
          Length = 861

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 137 HRCAVRKLFKQANSKH-VFDHFGCSSNYCFN 226
           H C +RKL K   S+H +   +  S  +CFN
Sbjct: 637 HPCRLRKLLKSVASRHGLISGWKFSGKHCFN 667


>03_06_0629 +
           35187318-35187320,35187424-35187534,35188089-35188191,
           35188357-35188416,35188502-35188661,35188755-35188872
          Length = 184

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 170 ANSKHVFDHFGCSSNYCF 223
           AN   VFD   C+S YCF
Sbjct: 105 ANLNRVFDQTACTSKYCF 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,294,034
Number of Sequences: 37544
Number of extensions: 211990
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)