Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120583.Seq
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     28   7.2  
SB_21454| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   28   7.2  
SB_56128| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 346 KRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAELI*K 519
           +RY    S +EH S    +D   K KRVK  ++    ++   +EK+++  ++ + I K
Sbjct: 509 ERYDRFMSAFEHVSTK--IDDIYKNKRVKDKELEMENKVWQQEEKLRQLKDIVQNIAK 564


>SB_21454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 534 ESYETLKIKLALSKYMAMLSTPEMTQPLLE 623
           ES+ +    L++    +++STPEMTQP+ E
Sbjct: 173 ESWPSTDRTLSVGTPQSVISTPEMTQPMRE 202


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 534 ESYETLKIKLALSKYMAMLSTPEMTQPLLE 623
           ES+ +    L++    +++STPEMTQP+ E
Sbjct: 54  ESWPSTDRTLSVGTPQSVISTPEMTQPMRE 83


>SB_56128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 409 CIKMKRVKCNKVRTVTEIVNSDEKIQKT 492
           CIK++ V CN   T+ ++VN+ +    T
Sbjct: 8   CIKLENVTCNSRYTMNQLVNTSQATSLT 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,920,284
Number of Sequences: 59808
Number of extensions: 265541
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)