Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120583.Seq
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   1.4  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   1.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.9  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 474 IAVYNFGDRSNFVAFDTF 421
           I ++ F D SNF+A +TF
Sbjct: 177 INIHLFHDASNFIAMETF 194


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 507 IDLKNLSSLESYETLKIKLALSKYMAMLSTPEMTQPLLEI 626
           +DL+     E  + L ++ +++KY+  L   E T+P+L I
Sbjct: 84  VDLEFYLGKEWKKNLNLRDSVTKYLIHLKEIEDTEPILLI 123


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 622 SNSGWVISGVLSIAMYLLSANLIFRV 545
           +  G  +S VLS+++  L+++LIF +
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTI 35


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 622 SNSGWVISGVLSIAMYLLSANLIFRV 545
           +  G  +S VLS+++  L+++LIF +
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTI 35


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 622 SNSGWVISGVLSIAMYLLSANLIFRV 545
           +  G  +S VLS+++  L+++LIF +
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTI 35


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 622 SNSGWVISGVLSIAMYLLSANLIFRV 545
           +  G  +S VLS+++  L+++LIF +
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTI 35


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 122 WRYD*HRCAV 151
           W YD HRC +
Sbjct: 176 WPYDTHRCRI 185


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 523 RFFKSIRPIRRFFGS 479
           RFFKS  P+   +GS
Sbjct: 553 RFFKSKPPVATMYGS 567


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,726
Number of Sequences: 438
Number of extensions: 2917
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)