Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120583.Seq
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    29   3.4  
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica...    28   4.4  
At1g77580.2 68414.m09032 myosin heavy chain-related low similari...    28   5.9  
At1g77580.1 68414.m09033 myosin heavy chain-related low similari...    28   5.9  
At4g11100.1 68417.m01802 expressed protein                             27   7.8  

>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
            domain-containing protein low similarity to SP|P41410 DNA
            repair protein rhp54 (RAD54 homolog) {Schizosaccharomyces
            pombe}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1256

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 589  SIAMYLLSANLIFRVS*LSKLLRFFKSIRPIRRFFGSFHRCLQFR 455
            S  M++L  NL+FRV    K+L F  +I PIR F   F    +++
Sbjct: 1057 SKVMFVL--NLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWK 1099


>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
            domain-containing protein low similarity to SP|Q9U7E0
            Transcriptional regulator ATRX homolog {Caenorhabditis
            elegans}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1261

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -2

Query: 589  SIAMYLLSANLIFRVS*LSKLLRFFKSIRPIRRFFGSFHRCLQFR 455
            S  M++L  NLIFRV    K+L F  +I PIR F   F    +++
Sbjct: 1063 SKVMFVL--NLIFRVVKREKILIFCHNIAPIRMFTELFENIFRWQ 1105


>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 779

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 427 VKCNKVRTVTEIVNSDEKIQKTYELAELI*KI*AV*KAMK 546
           VKCN+   V  I NS+    +T EL E + K+ A  + +K
Sbjct: 373 VKCNREEAVVHIENSEVLTSRTKELEEKLEKLEAEKEELK 412


>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 629

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 427 VKCNKVRTVTEIVNSDEKIQKTYELAELI*KI*AV*KAMK 546
           VKCN+   V  I NS+    +T EL E + K+ A  + +K
Sbjct: 339 VKCNREEAVVHIENSEVLTSRTKELEEKLEKLEAEKEELK 378


>At4g11100.1 68417.m01802 expressed protein
          Length = 287

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +1

Query: 334 YESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEL 510
           YE+ K +H + +     S   ++++C+K +R K  KVR   E +    + ++T  + EL
Sbjct: 41  YEAIKLHHENKAKELEVSNKRLLEECMKERREKA-KVRKTFEEMKKTMESERTAIVDEL 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,236,303
Number of Sequences: 28952
Number of extensions: 188942
Number of successful extensions: 366
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)