Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120582.Seq
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.55 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.8  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.0  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 374 FNKRLQPLQNFTSQYHYRGGSIANLSVLRLCNVHK 270
           +NK ++P+QN T + H   G    L+ ++L NV++
Sbjct: 38  YNKLIRPVQNMTEKVHVNFG----LAFVQLINVNE 68


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 124 QLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHLPLRLLW 276
           +L VD +  T    G+ K   DHN           +MK+ DI+HL    +W
Sbjct: 184 ELTVDILLETA--MGVSKPTRDHNAFEY----AMAVMKMCDILHLRHTKIW 228


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = -3

Query: 389 RVNTFFNKRLQPLQNFTSQYHYRGGSIANLSVLRLCNVHKSLSGR*TISSN 237
           ++ T+F+K    + N  +  +++GG    L   R C  ++  + +  I+S+
Sbjct: 460 KLYTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMNYERFTYKININSD 510


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = -3

Query: 389 RVNTFFNKRLQPLQNFTSQYHYRGGSIANLSVLRLCNVHKSLSGR*TISSN 237
           ++ T+F+K    + N  +  +++GG    L   R C  ++  + +  I+S+
Sbjct: 460 KLYTYFDKCDTLINNAVAVENFKGGMYLRLKARRACMNYERFTYKININSD 510


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 639 PVELLKIRSWYLVWLSRK 692
           P  LL + SW   WL+R+
Sbjct: 223 PCVLLVVLSWVSFWLNRE 240


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 225 NNHEVTGYRSPAAKTLVDIAKSQDAEVGDGTTS 323
           N++E +  RS A  +L+D   ++    G GTTS
Sbjct: 259 NHNERSTPRSHAKPSLIDDEPTEVTIGGGGTTS 291


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 225 NNHEVTGYRSPAAKTLVDIAKSQDAEVGDGTTS 323
           N++E +  RS A  +L+D   ++    G GTTS
Sbjct: 259 NHNERSTPRSHAKPSLIDDEPTEVTIGGGGTTS 291


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 225 NNHEVTGYRSPAAKTLVDIAKSQDAEVGDGTTS 323
           N++E +  RS A  +L+D   ++    G GTTS
Sbjct: 259 NHNERSTPRSHAKPSLIDDEPTEVTIGGGGTTS 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,419
Number of Sequences: 438
Number of extensions: 4132
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)