Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120582.Seq
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 121 6e-28
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 76 2e-14
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 71 1e-12
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 70 2e-12
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 67 1e-11
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 64 9e-11
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 64 9e-11
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 60 1e-09
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 55 6e-08
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 55 6e-08
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 37 0.016
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 35 0.048
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 34 0.083
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 34 0.083
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 34 0.083
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 34 0.11
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 33 0.15
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 33 0.15
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 33 0.19
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 31 0.59
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.4
At5g64910.1 68418.m08165 expressed protein ; expression support... 29 2.4
At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00... 29 3.1
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 29 4.1
At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi... 29 4.1
At3g26990.1 68416.m03377 expressed protein contains Pfam domain,... 28 5.5
At2g24430.2 68415.m02920 no apical meristem (NAM) family protein... 28 5.5
At2g24430.1 68415.m02919 no apical meristem (NAM) family protein... 28 5.5
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 28 7.2
At2g17790.1 68415.m02062 vacuolar protein sorting-associated pro... 27 9.6
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 121 bits (291), Expect = 6e-28
Identities = 59/81 (72%), Positives = 65/81 (80%)
Frame = +1
Query: 31 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 210
+S MQPQI+LL+EGTD +QGK QLVSNINAC V D VRTTLGPRGMDKLI D G I
Sbjct: 2 ASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTI 61
Query: 211 SNDGATIMKLLDIVHLPLRLL 273
SNDGATIMKLLDIVH ++L
Sbjct: 62 SNDGATIMKLLDIVHPAAKIL 82
Score = 115 bits (276), Expect = 4e-26
Identities = 57/84 (67%), Positives = 68/84 (80%)
Frame = +3
Query: 255 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 434
PAAK LVDIAKSQD+EVGDGTT+VV+LA E LK KPF+E+GVH + LIR+ RTAS LAI
Sbjct: 77 PAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAI 136
Query: 435 EKIKEQAVKIDNKSPEEQRDLLLK 506
K+KE AV I+ KS EE++ LL K
Sbjct: 137 AKVKELAVSIEGKSVEEKKGLLAK 160
Score = 92.3 bits (219), Expect = 3e-19
Identities = 46/73 (63%), Positives = 58/73 (79%)
Frame = +2
Query: 509 ASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALEDSFLVPGVAFK 688
A+T +SSKLI +K+ F+ +VVDAV+++ L++IGIKKVPGG + DSFLV GVAFK
Sbjct: 162 AATTLSSKLIGGEKEFFATMVVDAVMAIGNDDR-LNLIGIKKVPGGNMRDSFLVDGVAFK 220
Query: 689 KTFSYAGFEMQPK 727
KTFSYAGFE QPK
Sbjct: 221 KTFSYAGFEQQPK 233
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 76.2 bits (179), Expect = 2e-14
Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 SPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLA 431
+PAAK LVDI+K QD EVGDGTTSVV+LAGE+L+ + V +HP +I R AS A
Sbjct: 73 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMASECA 132
Query: 432 IEKIKEQAVKIDNK-SPEEQRDLLLK 506
+ ++ IDNK + E+ R LLK
Sbjct: 133 RNALLKRV--IDNKDNAEKFRSDLLK 156
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +2
Query: 500 IEVASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPGGALEDSFLVPGV 679
+++A T + SK++ Q K+HF+++ VDAV L L+ I I K PGG+L+DSFL G
Sbjct: 155 LKIAMTTLCSKILSQDKEHFAEMAVDAVFRLKGS-TNLEAIQIIKKPGGSLKDSFLDEGF 213
Query: 680 AFKK 691
K
Sbjct: 214 ILDK 217
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +1
Query: 58 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVD-HNGKAV-ISNDGATI 231
+ ++ + +G+ +++ + D V++TLGP+GMDK++ G AV ++NDGATI
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATI 65
Query: 232 MKLLDI 249
+K L I
Sbjct: 66 LKSLHI 71
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/68 (51%), Positives = 46/68 (67%)
Frame = +3
Query: 255 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 434
PAAK LV++A+ QD EVGDGTTSVVI+A E+LKR V +HP +I R A R +
Sbjct: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESC 132
Query: 435 EKIKEQAV 458
+ I+E+ V
Sbjct: 133 KYIEEKLV 140
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/73 (41%), Positives = 48/73 (65%)
Frame = +1
Query: 76 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVH 255
D+ G+ N+ ACQ V + V+T+LGP G+DK++VD G I+NDGATI+++L++ H
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEH 72
Query: 256 LPLRLLWTLQSLK 294
++L L L+
Sbjct: 73 PAAKVLVELAELQ 85
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Frame = +2
Query: 500 IEVASTAMSSKLIHQQKDHFSKIVVDAVLSLDTP------LLPLDMIGIKKVPGGALEDS 661
I A T+MSSKLI D F+ +VV+AVLS+ P+ I I K G + DS
Sbjct: 152 INCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKGINILKAHGQSARDS 211
Query: 662 FLVPGVA 682
+L+ G A
Sbjct: 212 YLLNGYA 218
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/71 (45%), Positives = 51/71 (71%)
Frame = +3
Query: 255 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 434
PAAK++++++++QD EVGDGTTSV++LAGE+L + F+E+ HP V+ RA A +I
Sbjct: 73 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSI 132
Query: 435 EKIKEQAVKID 467
+ + A+ ID
Sbjct: 133 AVLDKIAMSID 143
Score = 60.9 bits (141), Expect = 8e-10
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = +1
Query: 40 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 219
M +L+L + + G NI A + V D +RTTLGPR M K+++D G V++ND
Sbjct: 1 MHAPVLVLSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
Query: 220 GATIMKLLDIVH 255
G I++ LD+ H
Sbjct: 61 GNAILRELDVAH 72
Score = 31.9 bits (69), Expect = 0.45
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +2
Query: 506 VASTAMSSKLIHQQKDHFSKIVVDAV----LSLDTPLLPLDM---IGIKKVPGGALEDSF 664
+ + + +K Q D + + +DA + L L +D+ I ++KVPGG EDS
Sbjct: 153 LVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQFEDSE 212
Query: 665 LVPGVAFKK 691
++ GV F K
Sbjct: 213 VLKGVMFNK 221
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/71 (42%), Positives = 48/71 (67%)
Frame = +3
Query: 255 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 434
PAAK LV+++KSQD+ GDGTT+VV++AG +LK + + G+HP V+ ++ A AI
Sbjct: 82 PAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAI 141
Query: 435 EKIKEQAVKID 467
+ + AV ++
Sbjct: 142 DILTAMAVPVE 152
Score = 64.5 bits (150), Expect = 7e-11
Identities = 27/56 (48%), Positives = 43/56 (76%)
Frame = +1
Query: 106 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIVHLPLRLL 273
+NIN+ + V DAVRT+LGP+GMDK+I NG+ +I+NDGATI+ ++++ ++L
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKML 87
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Frame = +2
Query: 494 SPIEVASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLP--LDMIGIK--KVPGGALEDS 661
S ++ AST+++SK++ Q + + VDAVLS+ P P +D+ IK K GG ++D+
Sbjct: 158 SLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIVDLRDIKIVKKLGGTVDDT 217
Query: 662 FLVPGVAFKKTFSYA 706
V G+ F K S A
Sbjct: 218 HTVKGLVFDKKVSRA 232
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 64.1 bits (149), Expect = 9e-11
Identities = 27/69 (39%), Positives = 48/69 (69%)
Frame = +3
Query: 261 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 440
AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E
Sbjct: 8 AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEH 67
Query: 441 IKEQAVKID 467
++ A K +
Sbjct: 68 LERIAQKFE 76
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = +2
Query: 500 IEVASTAMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIKKVPGGALEDSFLV 670
++ T +SSK++++ K ++I V AVL+ L+ + LD+I ++ GG LED+ L+
Sbjct: 86 VQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELI 145
Query: 671 PGVAFKKTFSY 703
G+ K S+
Sbjct: 146 YGILIDKDMSH 156
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 64.1 bits (149), Expect = 9e-11
Identities = 27/69 (39%), Positives = 48/69 (69%)
Frame = +3
Query: 261 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 440
AK +V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E
Sbjct: 84 AKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEH 143
Query: 441 IKEQAVKID 467
++ A K +
Sbjct: 144 LERIAQKFE 152
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Frame = +1
Query: 55 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGAT 228
++LRE +T+ G +NI A + V +R++LGP+GMDK++ +G I+NDGAT
Sbjct: 13 IILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGAT 72
Query: 229 IMKLLDI 249
I++ +D+
Sbjct: 73 ILEQMDV 79
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = +2
Query: 500 IEVASTAMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIKKVPGGALEDSFLV 670
++ T +SSK++++ K ++I V AVL+ L+ + LD+I ++ GG LED+ L+
Sbjct: 162 VQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELI 221
Query: 671 PGVAFKKTFSY 703
G+ K S+
Sbjct: 222 YGILIDKDMSH 232
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Frame = +1
Query: 40 MQPQIL--LLREGTDQTQGKPQ-LVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 210
MQP + +L+EG G + ++ NI AC+ + RT+LGP GM+K++++H K +
Sbjct: 6 MQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFV 65
Query: 211 SNDGATIMKLLDIVHLPLRLL 273
+ND ATI+ L+I H +LL
Sbjct: 66 TNDAATIVNELEIQHPAAKLL 86
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +3
Query: 255 PAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 434
PAAK LV AK+Q E+GDG + AGE+L+ + + G+HP +I A A+
Sbjct: 81 PAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAV 140
Query: 435 EKIKEQAVKIDNKS 476
E I EQ V+ +++
Sbjct: 141 E-ILEQLVETGSET 153
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = +3
Query: 249 RSPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 428
++P A + A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R
Sbjct: 69 QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRA 128
Query: 429 AIE 437
++
Sbjct: 129 TLQ 131
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +1
Query: 112 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 249
INA + + D +++ LGP+G K++V +G ++ DG T++K + I
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQI 68
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = +3
Query: 249 RSPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 428
++P A + A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R
Sbjct: 69 QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRA 128
Query: 429 AIE 437
++
Sbjct: 129 TLQ 131
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +1
Query: 112 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 249
INA + + D +++ LGP+G K++V +G ++ DG T++K + I
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQI 68
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 506 VASTAMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIK 631
VA T + +KL D + IVV++VL + P P+D+ ++
Sbjct: 154 VARTTLRTKLYEGLADQLTDIVVNSVLCIRKPQEPIDLFMVE 195
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +3
Query: 261 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 440
A + ++A + GDGTT+ ILA EI+K V G +P L R + + IE+
Sbjct: 115 AALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEE 174
Query: 441 IKEQA 455
++++A
Sbjct: 175 LQKKA 179
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 130 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 249
+ D V TLGPRG + +++D G + NDG TI + +++
Sbjct: 68 LADCVGLTLGPRGRN-VVLDEFGSPKVVNDGVTIARAIEL 106
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/70 (22%), Positives = 37/70 (52%)
Frame = +3
Query: 261 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 440
AK + A + GDGTT+ V+LA ++ V G +P ++ R + ++ + +
Sbjct: 122 AKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAE 181
Query: 441 IKEQAVKIDN 470
+K+ + ++++
Sbjct: 182 LKKMSKEVED 191
Score = 31.1 bits (67), Expect = 0.78
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 130 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 249
+ D V TLGP+G + ++ G I NDG T+ + +++
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVEL 113
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 34.3 bits (75), Expect = 0.083
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 130 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 249
+ DAV TLGPRG + ++ + + VI NDG TI K +++
Sbjct: 55 LADAVSITLGPRGRNVVLAEKDTIKVI-NDGVTIAKSIEL 93
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 258 AAKTLV-DIAKSQDAEVGDGTTSVVILAGEILK 353
A TL+ ++A + GDGTT+ +ILA E++K
Sbjct: 100 AGATLIQEVAIKMNESAGDGTTTAIILAREMIK 132
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.083
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 282 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 461
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 462 IDN 470
+++
Sbjct: 193 VED 195
Score = 31.1 bits (67), Expect = 0.78
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 130 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 249
+ D V TLGP+G + ++ G I NDG T+ + +++
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVEL 117
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.083
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +3
Query: 282 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 461
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 462 IDN 470
+++
Sbjct: 193 VED 195
Score = 31.1 bits (67), Expect = 0.78
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 130 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 249
+ D V TLGP+G + ++ G I NDG T+ + +++
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVEL 117
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 130 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 246
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIE 92
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 130 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 246
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIE 91
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 130 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 237
V +AV+ T+GP+G + +I G I+ DG T+ K
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAK 88
Score = 31.1 bits (67), Expect = 0.78
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +3
Query: 261 AKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEK 440
A+ + +A + + GDGTT +L IL V GV+ L + A +
Sbjct: 101 AELVKQVASATNKVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSD 160
Query: 441 IKEQAVKIDNKSPEE 485
+K +AV I +PEE
Sbjct: 161 LKSRAVMI--STPEE 173
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +3
Query: 282 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 461
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K + +
Sbjct: 130 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMSKE 188
Query: 462 IDN 470
+++
Sbjct: 189 VED 191
Score = 31.1 bits (67), Expect = 0.78
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 130 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 249
+ D V TLGP+G + ++ G I NDG T+ + +++
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVEL 113
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 127 LVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 249
+V + TLGP+G + ++ + G I NDG T++K +++
Sbjct: 61 MVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIEL 101
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +3
Query: 282 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 461
AK+ D GDG+T+ +ILA ++ + G +P + R + ++ + ++K + +
Sbjct: 118 AKTNDL-AGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSRE 176
Query: 462 IDN 470
I++
Sbjct: 177 IED 179
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 55 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDK 177
++LRE +T+ G +NI+A + V +R++LGP+GM+K
Sbjct: 13 IILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At5g64910.1 68418.m08165 expressed protein ; expression supported
by MPSS
Length = 487
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 548 KDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPG 643
KD ++V V+ +D+P+ P D IG+ V G
Sbjct: 245 KDENKDVLVPVVVCIDSPIPPSDEIGVASVQG 276
>At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00646
F-box domain
Length = 492
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/99 (19%), Positives = 42/99 (42%)
Frame = +3
Query: 204 GYIKRWCNNHEVTGYRSPAAKTLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGV 383
G+I WC+ ++V P+ + +++ + D E + L++L +EE +
Sbjct: 327 GWIPEWCDGYQVFYLFKPSFSSAIELKQKVDVETMNMVHGDDCKYISTLRKLMSLIEE-I 385
Query: 384 HPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLL 500
P + RL E+ + + +D S + D++
Sbjct: 386 SPYAKRLFKKKGKRLMTEEETKLKMTVDEPSSSKCLDVM 424
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 348 LKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 488
LKR P E+G V+ AV ++ + +E ++ + K + + EE+
Sbjct: 616 LKRASPEAEKGKDEAVVAAAVVKSTAVVVESVESEEPKTEKEEDEER 662
>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 721
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = -3
Query: 365 RLQPLQNFTSQYHYRGGSIANLSVLRLCNVHKSLSGR*TISSNFMIVAP 219
+L+ + F Y+ GS+A ++L C HK+++ ++ M++ P
Sbjct: 498 KLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQP 546
>At3g26990.1 68416.m03377 expressed protein contains Pfam domain,
PF04818: Protein of unknown function, DUF618
Length = 513
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 372 QQTASTSSEFH-QPISLPRWFHRQPQRLETLQCP 274
Q TA+TSS QP+ P F QPQ L+ LQ P
Sbjct: 409 QNTATTSSSTPPQPLPPPPPFQLQPQFLQPLQPP 442
>At2g24430.2 68415.m02920 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 316
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 718 HLKASVTESFLES--HTRYQERIFKSSTGNLLDSNHVERQKWSVQRQDSINNNL 563
H ++ +S + + H R+F++ST +DS+H + ++ +N NL
Sbjct: 216 HPSLNINQSLMANAVHLAELSRVFRASTSTTMDSSHQQLMNYTHMPVSGLNLNL 269
>At2g24430.1 68415.m02919 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 316
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 718 HLKASVTESFLES--HTRYQERIFKSSTGNLLDSNHVERQKWSVQRQDSINNNL 563
H ++ +S + + H R+F++ST +DS+H + ++ +N NL
Sbjct: 216 HPSLNINQSLMANAVHLAELSRVFRASTSTTMDSSHQQLMNYTHMPVSGLNLNL 269
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -3
Query: 416 CSDCSDQNTRVNTFFNKRLQPLQNFTSQYHYRGGSIANLSVLRL-CN-VHKSLSG 258
C D + +N+F NK+ P + Q Y G + L VL CN HK G
Sbjct: 60 CPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVG 114
>At2g17790.1 68415.m02062 vacuolar protein sorting-associated
protein 35 family protein / VPS35 family protein similar
to vacuolar protein sorting 35 [Mus musculus]
GI:11875394; contains Pfam profile PF03635: Vacuolar
protein sorting-associated protein 35
Length = 830
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 264 KTLVDIAKS--QDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRL 428
K + IA S Q A G+T V L EIL + F E+GV P++ + +V + +L
Sbjct: 732 KRALKIANSAQQVANTARGSTGSVTLFIEILNKYLYFYEKGV-PQITVESVESLIKL 787
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,233,461
Number of Sequences: 28952
Number of extensions: 339999
Number of successful extensions: 1053
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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