Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120581.Seq
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    28   1.8  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    28   1.8  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   4.1  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.1  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   5.4  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   5.4  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    26   5.4  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   7.2  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   7.2  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   9.5  

>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 509 NSTKIVTRKPNDIFNEIDKELNGNCPFIKFIQRD 610
           N  KI+ ++ +    ++  EL GN PFI F   D
Sbjct: 250 NVGKILAKQSSSTLKKLSLELGGNAPFIVFEDAD 283


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 270 DDAYVDWNGVRMCAAPRLD 326
           DDA++DWN +R C+A  LD
Sbjct: 384 DDAFMDWN-LRKCSAAALD 401


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 218 TNILFLNTLPNSAYRKAIILRGLDVN-RFVAYTCV 117
           TNI+  N LP S++ K ++L+ L+ N +FV +  V
Sbjct: 340 TNIIIENILP-SSFSKPVVLKALNGNDKFVCFLTV 373


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = +2

Query: 650 LLNEYMTKSSIMKIITKFVIEENPAMN-----GEMSREIILDSYSVDNYRKLYIK 799
           +L+E + K    K +  F+I E+P++N      E ++E I  +  V + RK Y++
Sbjct: 58  VLDETLPKKGYEKALHSFIIHEDPSLNYISALKETAKERIRVTVPVYSSRKSYVQ 112


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 363 EDMAKHFVDNNILPPHPSNAKTRKINNSMFM 455
           E   KH +  NI    PS  K + +N+S+F+
Sbjct: 71  ESATKHSIFVNICVHEPSKVKNKLLNSSLFI 101


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 384 VDNNILPPHPSNAKTRKINNSMFMLKNFYKGL 479
           V N+  PP P+N  T   N+     K FYK L
Sbjct: 138 VFNSCSPPKPTNPITIIDNDKTHSFKKFYKSL 169


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +3

Query: 297 VRMCAAPRLDNNMHP----FRLYLLGEDMAKHFVD--NNILPP 407
           +RMC+A R D  +H       L +L      H V+  N+ILPP
Sbjct: 87  IRMCSAARTDKGVHAIVNVLGLKVLDNQPLPHVVNLVNDILPP 129


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 345 RLYLLGEDMAKHFVDNNILPPHPSNAKTRKINNSMFML 458
           R+ L G+D +K  +  N LP HP +      ++S   L
Sbjct: 79  RVKLFGKDKSKASMSTNDLPSHPRSQSVMGFSSSTSQL 116


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 641 LLDLLNEYMTKSSIMKIITKFVIEE 715
           L+D   E M   SI+ IITK++IE+
Sbjct: 38  LVDRSIERMESCSIINIITKYIIEQ 62


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 262 FCSTTRTWIGMVCE 303
           +CS++ TW+G +C+
Sbjct: 156 YCSSSGTWVGKICK 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,137
Number of Sequences: 5004
Number of extensions: 67477
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)