Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120581.Seq
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774...    30   2.5  
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647...    28   7.5  
06_01_0726 + 5319809-5319839,5319918-5319976,5320859-5320927,532...    28   9.9  
04_04_1066 - 30533114-30533185,30533507-30533614,30533716-305340...    28   9.9  
03_01_0579 - 4274927-4274998,4275320-4275427,4275529-4275904,427...    28   9.9  
01_01_0527 + 3867621-3867764,3867855-3868128,3868216-3868315,386...    28   9.9  

>06_01_0996 +
           7746358-7746493,7747102-7747262,7747586-7747647,
           7748142-7748595,7748994-7749134,7749444-7749633,
           7749842-7750530,7750605-7750804,7751210-7751375,
           7751850-7752046,7752162-7752396
          Length = 876

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 790 QLAIIVYRVGIKNNLARHFTVHSGVFFN--HKLGNYFHDRAFGHVFV 656
           +LA+IV    IK+N  R F    G FF    KLGN  +D+A GH F+
Sbjct: 710 ELALIVLSADIKDNSKRIFPAIIGAFFPILQKLGN-GNDKA-GHYFM 754


>06_01_0850 -
           6472213-6473541,6474229-6474282,6474616-6474671,
           6474824-6476012
          Length = 875

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 13  STNIFKFVKPQFRFVCNRTTVDILEFDTRMYIKPGTHVYATNLFTSNPRKMMAFL--YAE 186
           S N+ K VKP   F+  +  +D  +      +    ++Y++ LFTSNP K+   +    E
Sbjct: 660 SANLDKVVKPNLAFL-KQCGIDARD------VASNPNLYSSRLFTSNPMKLRDAVARVEE 712

Query: 187 FGKVFKNKIF 216
            G V  +++F
Sbjct: 713 LGMVRGSRVF 722


>06_01_0726 +
           5319809-5319839,5319918-5319976,5320859-5320927,
           5321009-5321071,5321360-5321419
          Length = 93

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 43  QFRFVCNRTTVDILEFDTRMYIKPGTHVYATNLFTSNPRKMMAFLYAEFG 192
           +F+   N   + I++F  R   +    +Y  + F+ NP +++  LY  FG
Sbjct: 28  KFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDELIIDLYNNFG 77


>04_04_1066 -
           30533114-30533185,30533507-30533614,30533716-30534091,
           30534173-30534330,30534416-30534536,30534613-30534831,
           30534923-30535022,30535254-30535383,30535474-30535617
          Length = 475

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 623 AQFPPDLLDLLNEYMTKSSIMKI 691
           A+ PPD + LLN+Y+ + +I+ I
Sbjct: 54  AEIPPDAIPLLNQYLQEGNIVYI 76


>03_01_0579 -
           4274927-4274998,4275320-4275427,4275529-4275904,
           4275986-4276143,4276229-4276349,4276426-4276644,
           4276736-4276835,4276923-4277196,4277287-4277430
          Length = 523

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 623 AQFPPDLLDLLNEYMTKSSIMKI 691
           A+ PPD + LLN+Y+ + +I+ I
Sbjct: 54  AEIPPDAIPLLNQYLQEGNIVYI 76


>01_01_0527 +
           3867621-3867764,3867855-3868128,3868216-3868315,
           3868407-3868625,3868702-3868822,3868908-3869065,
           3869147-3869522,3869624-3869731,3870053-3870124
          Length = 523

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 623 AQFPPDLLDLLNEYMTKSSIMKI 691
           A+ PPD + LLN+Y+ + +I+ I
Sbjct: 54  AEIPPDAIPLLNQYLQEGNIVYI 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,698,421
Number of Sequences: 37544
Number of extensions: 415494
Number of successful extensions: 967
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)