Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120581.Seq
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_23347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_30582| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)                        28   7.7  

>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 524 VTRKPNDIFNEIDKELNGNCPFIKFIQRDYI-FDAQFPPDLLDLLNEYMTKSSIMKIITK 700
           V R  N +   I  +L+G+ P  + I R  + +  + P   +D+  E +   ++  + TK
Sbjct: 278 VARAKNLLKTNILMQLDGSTPICEDIGRQMLTYGRRIPLPEIDMRIEMIDAKTVKDVATK 337

Query: 701 FVIEENPAMNG 733
           ++ +  PA+ G
Sbjct: 338 YIYDRCPAVVG 348


>SB_23347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 282 VDWNGVRMCAAPRLDNNMHPFRLYLLGEDMAKHFVDNNILPPHPSNAKTRKINNSM 449
           +DW G+RM  A   +           G     HFV + I    P++A++    N+M
Sbjct: 241 MDWEGLRMLDAEAKEGEEAKKERTFEGSPKESHFVRSTISRQMPNSAQSSAFRNAM 296


>SB_30582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 397 ILLSTKCLAMSSPSRYNRNGCMLLSNRGAAHIRTP 293
           +L S   L +  PS  N NGC  +SNR A++ + P
Sbjct: 14  VLASIYELQLFGPSLKNGNGCPRMSNRRASNNKRP 48


>SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)
          Length = 742

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 397 ILLSTKCLAMSSPSRYNRNGCMLLSNRGAAHIRTP 293
           +L S   L +  PS  N NGC  +SNR A++ + P
Sbjct: 39  VLASIYELQLFGPSLKNGNGCPRMSNRRASNNKRP 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,517,007
Number of Sequences: 59808
Number of extensions: 518091
Number of successful extensions: 1157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)