Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120581.Seq
         (801 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118353-1|AAM48382.1|  488|Drosophila melanogaster RE01052p pro...    35   0.15 
AY069555-1|AAL39700.1|  639|Drosophila melanogaster LD28458p pro...    30   4.2  
AE014297-3277|AAF56101.2|  639|Drosophila melanogaster CG31365-P...    30   4.2  

>AY118353-1|AAM48382.1|  488|Drosophila melanogaster RE01052p
           protein.
          Length = 488

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 409 CGGSILLSTKCLAMS-SPSRYNRNGCMLLSNRGAAHIRTPFQSTYAS-SNKKPACPLTRS 236
           C  +   S +C +   S +RY+ N CMLL +R    I  PF     S S K P  PL   
Sbjct: 420 CSSNSCSSNRCSSNKCSSNRYSSNRCMLLLHRQPLAILVPFPMAMISLSPKMPRPPLPSC 479

Query: 235 RSC 227
            +C
Sbjct: 480 TAC 482


>AY069555-1|AAL39700.1|  639|Drosophila melanogaster LD28458p
           protein.
          Length = 639

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 754 NNLARHFTVHSGVFFNHK-LGNYFHDRAFGHVFV*QIKQIWRKLSVEYVVALNK 596
           + L+RH   H+GV F+ K  G  F+DR+     V  + ++  KL+ +Y+   N+
Sbjct: 582 SGLSRHLVTHAGVMFSCKQCGRQFNDRSAVQRHVTTMHKVKNKLT-DYISETNE 634


>AE014297-3277|AAF56101.2|  639|Drosophila melanogaster CG31365-PA
           protein.
          Length = 639

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 754 NNLARHFTVHSGVFFNHK-LGNYFHDRAFGHVFV*QIKQIWRKLSVEYVVALNK 596
           + L+RH   H+GV F+ K  G  F+DR+     V  + ++  KL+ +Y+   N+
Sbjct: 582 SGLSRHLVTHAGVMFSCKQCGRQFNDRSAVQRHVTTMHKVKNKLT-DYISETNE 634


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,126,296
Number of Sequences: 53049
Number of extensions: 745286
Number of successful extensions: 1866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1866
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)