Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120581.Seq
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-2|AAA82265.1| 248|Caenorhabditis elegans Hypothetical pr... 32 0.42
Z83123-8|CAB05613.2| 330|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z81082-5|CAB03093.2| 429|Caenorhabditis elegans Hypothetical pr... 30 1.7
AL021487-11|CAA16355.2| 330|Caenorhabditis elegans Hypothetical... 28 6.8
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 28 8.9
U23168-11|AAC38811.2| 454|Caenorhabditis elegans Hypothetical p... 28 8.9
AL032654-10|CAB63391.1| 819|Caenorhabditis elegans Hypothetical... 28 8.9
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 28 8.9
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 28 8.9
AF000198-9|AAB53057.4| 684|Caenorhabditis elegans Hypothetical ... 28 8.9
>U41007-2|AAA82265.1| 248|Caenorhabditis elegans Hypothetical
protein C33H5.6 protein.
Length = 248
Score = 32.3 bits (70), Expect = 0.42
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 NRTTVDILEFDTRMYIKP-GTHVYATNLFTSNPRKMMAFLYAEFGKVFKNKIFVNINNYG 237
N TT+ +L + Y++ H N +NP+ FL + + NYG
Sbjct: 89 NDTTIRLLHLQKKSYVRYFDGHRMPVNFIRTNPKDREKFLSSSVDGEIRMFDTRTFENYG 148
Query: 238 CVLAG 252
C+LAG
Sbjct: 149 CLLAG 153
>Z83123-8|CAB05613.2| 330|Caenorhabditis elegans Hypothetical
protein T04A11.10 protein.
Length = 330
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 110 FMYMRVSNSKMSTVVRLHTNRNCGFTNLKM 21
F+Y ++ N K+S +LH NRN + N ++
Sbjct: 225 FLYRKIRNLKVSARCQLHVNRNTNYQNAEV 254
>Z81082-5|CAB03093.2| 429|Caenorhabditis elegans Hypothetical
protein F42G4.2 protein.
Length = 429
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 542 DIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDLLNEYMTKSSI 682
D+ + ++K L P I +Y FDA P D+L+ +EY++ ++
Sbjct: 270 DLIDMVEKYLKCTMPRGTLIPENYNFDALAPIDILESNSEYVSPETV 316
>AL021487-11|CAA16355.2| 330|Caenorhabditis elegans Hypothetical
protein Y45F10B.4 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 110 FMYMRVSNSKMSTVVRLHTNRNCGF 36
F+Y ++ N K+S +LH NRN +
Sbjct: 225 FLYRKIRNLKVSARCQLHVNRNTNY 249
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 539 NDIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDL 652
ND+F ID+ GN P FI D I ++FP L++
Sbjct: 4647 NDLFRRIDRLHTGNVPRQVFI--DGIIGSKFPTSRLEM 4682
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 539 NDIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDL 652
ND+F ID+ GN P FI D I ++FP L++
Sbjct: 4647 NDLFRRIDRLHTGNVPRQVFI--DGIIGSKFPTSRLEM 4682
>U23168-11|AAC38811.2| 454|Caenorhabditis elegans Hypothetical
protein B0228.8 protein.
Length = 454
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 103 YIKPGTHVYATNLFTSNPRKMMAFLYAEFGKV--FKNKIFVNINNYG 237
YI P T V+ ++ N + + + Y FGKV + +F +I+N G
Sbjct: 234 YITPATKVFICDVGKMNGNQFVEYWYKRFGKVQTYSEHVF-DISNNG 279
>AL032654-10|CAB63391.1| 819|Caenorhabditis elegans Hypothetical
protein Y52B11A.10 protein.
Length = 819
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 512 STKIVTRKPNDIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLD 649
S +VT+K ++I +E +K+ P KF+ + I + PP +D
Sbjct: 489 SWPLVTQKIDEIHSEFEKKPISALPRAKFLLEEVILLKKSPPKAID 534
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 539 NDIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDL 652
ND+F ID+ GN P FI D I ++FP L++
Sbjct: 4647 NDLFRRIDRLHTGNVPRQVFI--DGIIGSKFPTSRLEM 4682
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 539 NDIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDL 652
ND+F ID+ GN P FI D I ++FP L++
Sbjct: 4647 NDLFRRIDRLHTGNVPRQVFI--DGIIGSKFPTSRLEM 4682
>AF000198-9|AAB53057.4| 684|Caenorhabditis elegans Hypothetical
protein T28F2.7 protein.
Length = 684
Score = 27.9 bits (59), Expect = 8.9
Identities = 7/32 (21%), Positives = 21/32 (65%)
Frame = +1
Query: 349 CIYWARTWLSTLSIIIYYRRTLLTQRLAKSTI 444
C++W W+S++ +++ +L++ ++K T+
Sbjct: 104 CVFWVFIWISSMIMLLTQVTSLISMYISKPTV 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,210,614
Number of Sequences: 27780
Number of extensions: 388795
Number of successful extensions: 944
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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