Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120581.Seq
(801 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45480.1 68415.m05656 expressed protein 33 0.22
At3g13970.1 68416.m01764 autophagy 12b (APG12b) identical to aut... 31 1.2
At1g54210.1 68414.m06179 autophagy 12a (APG12a) identical to aut... 30 1.6
At1g58090.1 68414.m06583 F-box family protein contains F-box dom... 29 2.7
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 29 3.6
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 29 3.6
At2g19170.1 68415.m02237 subtilase family protein contains simil... 28 6.3
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 28 8.3
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 28 8.3
At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CH... 28 8.3
>At2g45480.1 68415.m05656 expressed protein
Length = 429
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -3
Query: 376 LAMSSPSRYNRNGCMLLSNRGAAHIRT 296
LA+SS S YN + LLSN+G HI T
Sbjct: 59 LALSSSSNYNYHSSSLLSNKGVTHIDT 85
>At3g13970.1 68416.m01764 autophagy 12b (APG12b) identical to
autophagy 12b [Arabidopsis thaliana],
gi|19912171|dbj|BAB88397
Length = 94
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 76 DILEFDTRMYIKPGTHVYATNLFTSNPRKMMAFLYAEFGKVFKNKIFVNINNYGCVLA 249
++++F R VY + F+ NP + + LY FG F K+ V NY C +A
Sbjct: 40 NVIDFLRRQLHSDSLFVYVNSAFSPNPDESVIDLYNNFG--FDGKLVV---NYACSMA 92
>At1g54210.1 68414.m06179 autophagy 12a (APG12a) identical to
autophagy 12a [Arabidopsis thaliana] GI:19912169
Length = 96
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 79 ILEFDTRMYIKPGTHVYATNLFTSNPRKMMAFLYAEFGKVFKNKIFVNINNYGCVLA 249
+++F R VY + F+ NP + + LY FG F K+ V NY C +A
Sbjct: 43 VIDFLRRQLHSDSLFVYVNSAFSPNPDESVIDLYNNFG--FDGKLVV---NYACSMA 94
>At1g58090.1 68414.m06583 F-box family protein contains F-box domain
Pfam:PF00646
Length = 371
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 139 LFTSNPRKMMAF--LYAEFGKVFKNKIFVNINNYGCVLAGRPVFCSTTRTWI 288
LF PR ++ F + E+ +FKNK F+N N+ C GRP T + I
Sbjct: 15 LFRVPPRSLVRFRSVCREWNTLFKNKRFIN-KNFAC---GRPEIMLNTHSHI 62
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/98 (25%), Positives = 46/98 (46%)
Frame = +2
Query: 497 VHGGNSTKIVTRKPNDIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDLLNEYMTKS 676
V+ G + ++ T+ ++ EI + L C ++ ++ + FP DL D LN+YM K
Sbjct: 162 VYLGEAEQVPTKDDKELELEIVRNLRKRC--VESERQISVALEAFPLDLQDQLNQYMDKR 219
Query: 677 SIMKIITKFVIEENPAMNGEMSREIILDSYSVDNYRKL 790
+ + +V PA + ++ SY DN +L
Sbjct: 220 MDGETLKSYVTHW-PAQRWQEYEPLL--SYCRDNSVRL 254
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 363 EDMAKHFVD-NNILPPH-PSNAKTRKINNSMFMLKNFYKGLPLFKLKYTVVT 512
E + +HFV+ N+L P P N K + +++ +LK + K +YT +T
Sbjct: 19 EKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLKSEYTALT 70
>At2g19170.1 68415.m02237 subtilase family protein contains
similarity to meiotic serine proteinase TMP GI:6468325
from [Lycopersicon esculentum]
Length = 815
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 360 GEDMAKHFVDNNILPPHPSNAKTRKI 437
GED+ FVD+ I P HPS A ++
Sbjct: 151 GEDIVIGFVDSGIYPHHPSFASHHRL 176
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 110 FMYMRVSNSKMSTVVRLHTNRNCGF 36
F+YMR+SN + VV + N CGF
Sbjct: 58 FVYMRISNVYIVIVVSSNANVACGF 82
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 110 FMYMRVSNSKMSTVVRLHTNRNCGF 36
F+YMR+SN + VV + N CGF
Sbjct: 58 FVYMRISNVYIVIVVSSNANVACGF 82
>At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CHX3)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 822
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 403 GSILLSTKCLAMSSPSRYNRNGCMLLSNRGAAHIRTPFQSTYAS 272
GS+ +ST A+S P + + CML N + I PF T+++
Sbjct: 574 GSVFVSTYT-ALSMPDTMHGDICMLALNNTTSLILLPFHQTWSA 616
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,750,916
Number of Sequences: 28952
Number of extensions: 341341
Number of successful extensions: 852
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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