Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120578X.Seq
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   4.9  
SB_19637| Best HMM Match : Cullin (HMM E-Value=0)                      28   6.4  
SB_48398| Best HMM Match : BBE (HMM E-Value=4.1)                       27   8.5  

>SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 546

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 108 IPNRYYK--LFRFQFSEPCITNLYY 176
           +P  YYK  L     SEPC+ N+YY
Sbjct: 443 LPEEYYKAPLLHQSPSEPCLANVYY 467


>SB_19637| Best HMM Match : Cullin (HMM E-Value=0)
          Length = 685

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 400 KTVLRYYDFVVIQKN*LNGFSNLSIQYFRDK 492
           + +L Y D V +Q+N ++   NL +  FRDK
Sbjct: 51  RDILMYMDRVYVQQNGVDNVYNLGLILFRDK 81


>SB_48398| Best HMM Match : BBE (HMM E-Value=4.1)
          Length = 243

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 578 LNYEHCSYHLKQVNDQY 528
           +N+EHC  H K VND +
Sbjct: 128 INWEHCFSHCKDVNDYF 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,225,705
Number of Sequences: 59808
Number of extensions: 266501
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)