Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120578X.Seq
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58750-14|AAB00655.4|  340|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U80840-6|AAB37934.1|  317|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U58750-14|AAB00655.4|  340|Caenorhabditis elegans Hypothetical
           protein F55G1.15 protein.
          Length = 340

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 48  RT*FYEQYLYFVPFSTCRLSIPNRYYKLFRFQFSEPCIT 164
           +T F   YLY    S C L    RY  +  FQ  EP IT
Sbjct: 234 QTLFPADYLYAFTVSGCYLEFLQRYLNMGYFQLGEPRIT 272


>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical
           protein R09A8.2 protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -1

Query: 362 CNSESFFFFKLKMANTLNGR---RCTEKISFNGRRST 261
           C++ES F+FKLK  +++       C++ ++ NG+  T
Sbjct: 47  CDNESTFYFKLKSKDSIVSNVPDVCSKPVAGNGKEKT 83


>U80840-6|AAB37934.1|  317|Caenorhabditis elegans Hypothetical
           protein F08D12.11 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 78  FVPFSTCRLSIPNRYYKLFRFQFSEPCIT 164
           F P ST R+ + N+++ ++R+  SEP  T
Sbjct: 183 FTPKSTQRILLENQHFLMYRWADSEPRFT 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,985,261
Number of Sequences: 27780
Number of extensions: 229921
Number of successful extensions: 423
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)