Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120576.Seq
         (856 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    25   1.0  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   2.3  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    23   4.1  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   7.1  

>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 447 VQGRNAGENVESCLLLQRTCRKTAI*LSRMLTFAQETPC 563
           +Q     EN  +CLL ++ C      L R+L  A +T C
Sbjct: 36  LQSDRLTENYVNCLLEKKPCTPDGEELKRVLPDALKTSC 74


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 650 PDCCRDKLFFLFHS*ILGTCWLV 582
           P C +        S ILGTCW++
Sbjct: 39  PRCDKISAICFLLSTILGTCWII 61


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 463 PEKTSSPVCYCSALVARPQSS 525
           PE++SS V   SALV  P +S
Sbjct: 11  PEESSSEVTSSSALVMSPANS 31


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 480 SCLLLQRTCRKTAI*LSRMLTFAQETPC 563
           +CLL +  C    + L R+L  A +T C
Sbjct: 45  ACLLSKGPCPPQGVDLKRVLPEALQTNC 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,614
Number of Sequences: 336
Number of extensions: 4735
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)