Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120576.Seq
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    30   0.48 
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    26   5.9  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.9  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   7.8  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   7.8  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 194 PDFHYHTKQTRSNAVRQNFPGPTCARPKCSKRTAAKPPFT*SHENLESSRSGHTLGRR 367
           P+F+Y T     NAV   F         CS    +K P+    E  E  R+G TLG++
Sbjct: 106 PNFYYLTGCLEPNAVLLMFKNGASGSYDCSLYLPSKNPYI---EKWEGLRTGSTLGKK 160


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +2

Query: 53  SNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPD 199
           SN+R V T+D N +    D+ N++     +S  Q+ ++R ++  ++  D
Sbjct: 200 SNHRMVYTADNNNLVYCYDIANLKTPLSVLSGHQL-AVRSIKSSNSAHD 247


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 143 SDPQINSLR-QLRRMDNVPDFHYHTKQTRSNAVRQNFPGP 259
           SDP+ NS   Q  RM   P FH    Q  SN    +  GP
Sbjct: 375 SDPESNSSDLQYLRMFRFPSFHQSHNQPASNNEASDTNGP 414


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +2

Query: 647 PAANPNSPQYVDISDLPAGQ----TIMCIEPYSFSDLV 748
           P A   S +Y+   +LPAGQ     I+C   Y+  D +
Sbjct: 791 PLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSI 828


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
 Frame = +1

Query: 169 PIAAHGQRARLSLPHQTDAIQCSQTKLP---RTNVR---TPEVFKTHCSKTPVYIIT*EP 330
           PI      A  + P+  DA   S  +L    R  V    TP  F+ H S  P  +++   
Sbjct: 238 PIQHQNSNAFSNYPYPLDASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSAT- 296

Query: 331 *K*QEWAYSWPAAVIFCLPPPH*YKI*STPSIEPAEVIMCKVETPEKTSSPVCYCSALVA 510
               E + S   AV+  +PP     + S P+   +  +M    T    SSP  + S L A
Sbjct: 297 ----ELSKSVDNAVL-PIPPTTAPAVVSPPA--SSFPLMSSAATSGNISSPALFDSELGA 349

Query: 511 RPQSS 525
           RP+ S
Sbjct: 350 RPEGS 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,553,730
Number of Sequences: 5004
Number of extensions: 75963
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)