Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120576.Seq
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1330 + 26191062-26191314,26191894-26191961,26192125-261923...    31   0.89 
02_05_0201 + 26687369-26689228                                         31   1.5  
03_02_0768 + 11015855-11016063,11016285-11016359,11018296-110188...    30   2.7  
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423...    28   8.3  
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284...    28   8.3  

>08_02_1330 +
           26191062-26191314,26191894-26191961,26192125-26192355,
           26192736-26192837,26192893-26192955,26193910-26193984
          Length = 263

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +2

Query: 92  ITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTKQT-RSNAVRQNFPGPTCA 268
           + R + VP++R    G+  PQ+NS  Q+ +  +VP+     K   +   V++  P    A
Sbjct: 108 VMRKSSVPDLREKLSGVQRPQLNSTVQIPK--SVPEISTSAKPVQKREPVQKREPPVNAA 165

Query: 269 RPKCSKRTAAKPP 307
            P   K      P
Sbjct: 166 LPATKKVNEPSAP 178


>02_05_0201 + 26687369-26689228
          Length = 619

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 370 PPPAKSMPTPATFKVLM*LCKRGFCC 293
           PPP +  P P T++    +CK+GF C
Sbjct: 23  PPPPQPPPPPLTYRHHCKVCKKGFMC 48


>03_02_0768 +
           11015855-11016063,11016285-11016359,11018296-11018833,
           11019356-11020465
          Length = 643

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +2

Query: 65  FVSTSDINRITRNNDVPNIRN-VFQGISDPQINSLRQLRRMDNVPDFHYHTKQTRSNAVR 241
           F+S+S ++ +   +  P IRN +   IS     +    R    V     +T   R +   
Sbjct: 115 FISSSILSSLLFASAAPRIRNRIAHSISMALAAAATTFRPRLVVTAKADNTDTRRRHWKA 174

Query: 242 QNFPGPTCA-RPKCSKRTAAKPPFT*SHENLESSR 343
             FP PT +  P+ S RTA +PP     E+ +SSR
Sbjct: 175 GEFPFPTSSDTPRRSARTAERPPDKPRDEDGDSSR 209


>01_06_1263 +
           35840502-35841308,35841763-35841969,35842272-35842370,
           35843361-35843464,35844521-35844698,35844774-35845244,
           35845383-35845523,35846290-35846349,35846427-35846490,
           35847295-35847524,35847606-35847704
          Length = 819

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 14  NLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNV 193
           N G ++  PGY  SNN + S S     + +N V +    +Q  +    N+ +    + N 
Sbjct: 143 NAGAHQTAPGYATSNNYYQSNSWTGGSSGDNHVQS----YQSYTPSDTNAAQSSSSLPN- 197

Query: 194 PDFHYH 211
             +HYH
Sbjct: 198 NSYHYH 203


>01_01_0362 -
           2843659-2844468,2844669-2844699,2844824-2844903,
           2846680-2847831
          Length = 690

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -1

Query: 367 PPAKSMPTPATFKVLM*LCKRGFCCSAF*TLRACARWSWEVLSDCIGSRLFGVVMKVWHV 188
           PP+ S    +TF  L  + +    C+ +    + A  SW   + C+  R F +V +   V
Sbjct: 189 PPSSSSSGRSTFSQLYLVVQHKKDCNEYFYSYSAATCSWSAPTMCVDGRRFSLVGERSAV 248

Query: 187 VH 182
           VH
Sbjct: 249 VH 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,136,624
Number of Sequences: 37544
Number of extensions: 543898
Number of successful extensions: 1310
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)