Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120576.Seq
(856 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30334| Best HMM Match : Myosin_head (HMM E-Value=8.8e-12) 32 0.68
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_6767| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_39630| Best HMM Match : Pro_Al_protease (HMM E-Value=1.8) 31 1.6
SB_14319| Best HMM Match : Pedibin (HMM E-Value=2.5) 31 1.6
SB_10064| Best HMM Match : Strep_SA_rep (HMM E-Value=8.4) 31 1.6
SB_6151| Best HMM Match : Extensin_2 (HMM E-Value=2.6) 30 2.8
SB_54511| Best HMM Match : Strep_SA_rep (HMM E-Value=8) 30 2.8
SB_27113| Best HMM Match : Str_synth (HMM E-Value=0) 30 2.8
SB_9323| Best HMM Match : MutS_IV (HMM E-Value=3.2) 30 2.8
SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_2482| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_7307| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 29 6.4
SB_41631| Best HMM Match : Ank (HMM E-Value=0.00018) 28 8.4
>SB_30334| Best HMM Match : Myosin_head (HMM E-Value=8.8e-12)
Length = 280
Score = 31.9 bits (69), Expect = 0.68
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +2
Query: 8 VRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQG-ISDPQINSLRQLRRM 184
+++ G Y Y+L D+ R+TR D N N QG +SDP ++ +RM
Sbjct: 53 MQSKGERNYHVFYRLCAGAPKQIKDMLRLTRAQDF-NYLN--QGSLSDPNLDDTSDFKRM 109
Query: 185 DNVPDFHYHTKQTRSNAVR 241
D D +K+ +SN R
Sbjct: 110 DASMDNVGFSKEEKSNIYR 128
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 31.5 bits (68), Expect = 0.90
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 58 QPVCEHFRHKQNHS*QRCPQHTQCISGHFRPSNKLIAPIAAHGQRA-RLSLPHQTDAIQC 234
QP EH + HS Q P+H+Q H +PS + P H Q + SLP Q ++
Sbjct: 771 QPSPEHSQPSPEHS-QPSPEHSQPSPEHSQPSPEHCQPSPEHSQPSPEHSLPSQEHSLPS 829
Query: 235 SQTKL 249
+ L
Sbjct: 830 PTSSL 834
>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 104 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 196
+D PN+RN + S+P SL L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 267
>SB_6767| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 104 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 196
+D PN+RN + S+P SL L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 267
>SB_39630| Best HMM Match : Pro_Al_protease (HMM E-Value=1.8)
Length = 245
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 104 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 196
+D PN+RN + S+P SL L R DNVP
Sbjct: 157 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 189
>SB_14319| Best HMM Match : Pedibin (HMM E-Value=2.5)
Length = 226
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 104 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 196
+D PN+RN + S+P SL L R DNVP
Sbjct: 114 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 146
>SB_10064| Best HMM Match : Strep_SA_rep (HMM E-Value=8.4)
Length = 216
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 104 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 196
+D PN+RN + S+P SL L R DNVP
Sbjct: 104 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 136
>SB_6151| Best HMM Match : Extensin_2 (HMM E-Value=2.6)
Length = 287
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +1
Query: 112 PQHTQCISGHFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRTNVRTPEVFKTH 291
P HTQ H P++ + PI AH Q + Q D I P T + P++F
Sbjct: 222 PAHTQV---HPIPAHAQVDPIPAHAQVNPIPEHAQVDPIPAHAQANPATANKEPDIFSVE 278
Query: 292 CSKT 303
+T
Sbjct: 279 MFQT 282
>SB_54511| Best HMM Match : Strep_SA_rep (HMM E-Value=8)
Length = 267
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 104 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 196
+D PN+RN + S+P SL L R DNVP
Sbjct: 114 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 146
>SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)
Length = 607
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 104 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 196
+D PN+RN + S+P SL L R DNVP
Sbjct: 547 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 579
>SB_9323| Best HMM Match : MutS_IV (HMM E-Value=3.2)
Length = 245
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 104 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 196
+D PN+RN + S+P SL L R DNVP
Sbjct: 157 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 189
>SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 14 NLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQI 157
N NN + +NNR S+++ NR RNND NI N+ + S+ ++
Sbjct: 94 NNSNNNSNNNNRSNNNRNNSSNNNNRSNRNNDSNNI-NISRNNSNSRV 140
>SB_2482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 104 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 196
+D PN+RN + S+P SL L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 267
>SB_7307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 202 SLPHQTDAIQCSQTKLPRT-NVRTPEVFKTHCSKTPVYII 318
S P QT + C + R NV +V T C KT Y++
Sbjct: 56 SNPSQTSVLVCRSCVMERNANVHRADVMDTDCPKTAYYVV 95
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 617 TEKTVCRGSNPAANPNSPQYVDISDLPAGQTIMCIEPYS 733
TE+ +C NP AN + + SD AG CIE ++
Sbjct: 377 TERNLCEPVNPCANGGTCKRTVGSDGSAGYNCTCIEGFT 415
>SB_41631| Best HMM Match : Ank (HMM E-Value=0.00018)
Length = 353
Score = 28.3 bits (60), Expect = 8.4
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 85 KQNHS*QRCPQHTQCI-SGHFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRTN 261
KQ+H+ +R + GH PS L P ++H + L+LPH A S++
Sbjct: 195 KQHHNDRRLSREEGSYREGHRSPSQPLFQPPSSHLISSHLTLPH---ADSSSESGYSSQG 251
Query: 262 VRTPEVFKTHCSKTP 306
+TP+ + TP
Sbjct: 252 QQTPKYGSLNSIVTP 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,909,887
Number of Sequences: 59808
Number of extensions: 625419
Number of successful extensions: 1621
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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