Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120576.Seq
         (856 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF492764-1|AAM11673.1|  417|Drosophila melanogaster gag protein ...    29   8.1  

>AF492764-1|AAM11673.1|  417|Drosophila melanogaster gag protein
           protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +2

Query: 26  NRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFH 205
           NR+ P    + N F  T +      NN V   R    G +   I  LR    + N P++ 
Sbjct: 288 NRFGPNQTYTPNNFPPTGNTQT---NNPVKRQRPSDSGQTKMSIEELRYQEMVSNQPEYP 344

Query: 206 YH 211
           YH
Sbjct: 345 YH 346


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,438,050
Number of Sequences: 53049
Number of extensions: 941666
Number of successful extensions: 2730
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2730
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)