Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120576.Seq
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z75954-3|CAB00108.1|  323|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    30   1.8  
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.      29   4.2  
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       29   5.6  
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       29   5.6  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina...    28   7.4  
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul...    28   7.4  

>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
            F26A3.3 protein.
          Length = 1632

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 218  VWCGNESLARCPCAAIGAMSLFEGLKCPEIHCVC 117
            V  G   L + PC   G + +FE +  PE+H +C
Sbjct: 920  VLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMC 953


>Z75954-3|CAB00108.1|  323|Caenorhabditis elegans Hypothetical
           protein F58H1.5 protein.
          Length = 323

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 17  LGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNI 121
           + + +++P  Q S+N+FVS SDI  I  + D   +
Sbjct: 28  ISDEKFEPAEQCSSNQFVSISDIGTIYDSEDTQQL 62


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
            polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 218  VWCGNESLARCPCAAIGAMSLFEGLKCPEIHCVC 117
            V  G   L + PC   G + +FE +  PE+H +C
Sbjct: 920  VLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMC 953


>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
           protein F26A3.8 protein.
          Length = 1601

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 209 GNESLARCPCAAIGAMSLFEGLKCPEIHCVC 117
           G   L + PC   G + +FE +  PE+H +C
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMC 926


>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
          Length = 1601

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 209 GNESLARCPCAAIGAMSLFEGLKCPEIHCVC 117
           G   L + PC   G + +FE +  PE+H +C
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMC 926


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 11  RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 130
           RN GNNRY P  ++  +R     D NR+T N  VP+   +
Sbjct: 9   RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 11  RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 130
           RN GNNRY P  ++  +R     D NR+T N  VP+   +
Sbjct: 9   RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 11  RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 130
           RN GNNRY P  ++  +R     D NR+T N  VP+   +
Sbjct: 9   RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 448 CKVETPEKTSSPVCYCSALVARPQSSSVGC 537
           CK  T    S+ VC CS L   P +SS GC
Sbjct: 3   CKCSTSTNISNRVCSCSPL---PSTSSCGC 29


>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
           receptor T17A3.1 protein.
          Length = 1083

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/81 (24%), Positives = 33/81 (40%)
 Frame = +2

Query: 161 SLRQLRRMDNVPDFHYHTKQTRSNAVRQNFPGPTCARPKCSKRTAAKPPFT*SHENLESS 340
           +L  +   D +P+  +     +S     +    TC  PK + R +     T  H NL   
Sbjct: 552 ALETVHVADEIPNIKFKLASNKSAIYEGDTVKLTCVVPKLAGRCS----ITWVHRNLSIL 607

Query: 341 RSGHTLGRRRLSFVYRRHIST 403
            S       +LSF+Y R+ +T
Sbjct: 608 HSTEVTEHSQLSFLYIRNATT 628


>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 1
           protein.
          Length = 1083

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/81 (24%), Positives = 33/81 (40%)
 Frame = +2

Query: 161 SLRQLRRMDNVPDFHYHTKQTRSNAVRQNFPGPTCARPKCSKRTAAKPPFT*SHENLESS 340
           +L  +   D +P+  +     +S     +    TC  PK + R +     T  H NL   
Sbjct: 552 ALETVHVADEIPNIKFKLASNKSAIYEGDTVKLTCVVPKLAGRCS----ITWVHRNLSIL 607

Query: 341 RSGHTLGRRRLSFVYRRHIST 403
            S       +LSF+Y R+ +T
Sbjct: 608 HSTEVTEHSQLSFLYIRNATT 628


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,236,635
Number of Sequences: 27780
Number of extensions: 457462
Number of successful extensions: 1308
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)