Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120576.Seq
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32190.1 68414.m03959 expressed protein                             34   0.14 
At1g14420.1 68414.m01710 pectate lyase family protein similar to...    31   0.98 
At5g15260.1 68418.m01787 expressed protein predicted proteins, A...    30   1.7  
At4g00550.1 68417.m00076 UDP-galactose:MGDG galactosyltransferas...    29   3.0  
At3g62610.1 68416.m07033 myb family transcription factor similar...    29   5.2  
At2g20100.1 68415.m02348 ethylene-responsive family protein simi...    28   9.1  

>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 21/65 (32%), Positives = 24/65 (36%)
 Frame = -3

Query: 197 LARCPCAAIGAMSLFEGLKCPEIHCVCWGHRCYE*FCLCLKCSQTGC*IIDSPADICCFQ 18
           ++ C C      S F   KCP+  C CW          CLKC  T C         CC  
Sbjct: 349 VSSCCCPTFKCSSCFGKPKCPK--CSCW---------KCLKCPDTEC-----CRSSCCCS 392

Query: 17  GCVHW 3
           GC  W
Sbjct: 393 GCFSW 397


>At1g14420.1 68414.m01710 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 459

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 24/95 (25%), Positives = 41/95 (43%)
 Frame = -3

Query: 446 IITSAGSIDGVDYILY*CGGGKQKITAAGQEYAHSCYFQGSHVIM*TGVLLQCVLNTSGV 267
           +ITS  +IDG    +Y   G    +        H+ Y +  H++   G L++      G+
Sbjct: 189 MITSDKTIDGRGARVYIMEGAGLTLQFVNNVIIHNIYVK--HIVPGNGGLIRDSEAHIGL 246

Query: 266 RTLVLGSFV*LHWIASVWCGNESLARCPCAAIGAM 162
           RT   G  + L    ++W  + S+ RC    I A+
Sbjct: 247 RTKSDGDGISLFGATNIWIDHVSMTRCADGMIDAI 281


>At5g15260.1 68418.m01787 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 234

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 182 MDNVPDFHYHTKQTRSNAVRQNFPGPTCA 268
           M + PDFH+H+KQ+R+++  +     +C+
Sbjct: 17  MAHSPDFHHHSKQSRTSSSNRKSSSSSCS 45


>At4g00550.1 68417.m00076 UDP-galactose:MGDG galactosyltransferase 2
           / digalactosyldiacylglycerol synthase 2 (DGD2) identical
           to digalactosyldiacylglycerol synthase (DGD2)
           GI:18141112 [Arabidopsis thaliana]
          Length = 473

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 29  RYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGIS 145
           R++  ++ +  RF+  SD+NR++R +   + R+VF   S
Sbjct: 375 RHELSWEAATQRFIKVSDLNRLSRADSNLSKRSVFASSS 413


>At3g62610.1 68416.m07033 myb family transcription factor similar to
           myb-like transcription factor GI:168590 from [Zea mays]
          Length = 343

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 206 YHTKQTRSNAVRQNFPGPTCARPKCSKRTAAKPPFT*SHENLESSRS 346
           Y  K T +N V +N P P   RP  + R+A KP F  + +N ++  S
Sbjct: 119 YFRKPTVANTV-ENAPPPPKRRPGRTSRSAMKPKFILNPKNHKTPNS 164


>At2g20100.1 68415.m02348 ethylene-responsive family protein similar
           to Ethylene-regulated ER33 protein (GI:5669656)
           [Lycopersicon esculentum]; PMID: 12679534;  putative
           bHLH133 transcription factor
          Length = 362

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
 Frame = +2

Query: 557 PLLANDSPLLTNMCQGF--NYETEKTVCRGSNPA-----ANPNSPQYVDISDLPAGQTIM 715
           PL++++ P  T        N+ +  T    S+P+     +NPN   ++++SDLP  Q   
Sbjct: 35  PLMSHEPPSTTAFIPSLLPNFFSSPTSSSSSSPSFPPPNSNPNFSSWLEMSDLPLDQ--- 91

Query: 716 CIEPYSFSDLVGDLGLIGYWEEKV 787
              P+S S L+   GL+   EEK+
Sbjct: 92  ---PWSLSQLLLG-GLMMGEEEKM 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,987,704
Number of Sequences: 28952
Number of extensions: 419520
Number of successful extensions: 978
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)