Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120575.Seq
         (873 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            60   1e-10
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    37   0.001
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    24   5.3  
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    24   5.3  
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    24   5.3  
AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative deoxynucl...    24   7.0  
AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate deo...    24   7.0  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 59.7 bits (138), Expect = 1e-10
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
 Frame = +1

Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 435
           TAGQER+ SL   +YRGA   ++V+D+   ++F   ++W  E   QASP    N    + 
Sbjct: 80  TAGQERYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASP----NIVIALA 135

Query: 436 GNKVDLDN-RAVSVKRGQQW 492
           GNK DL N R V  +  +Q+
Sbjct: 136 GNKADLANSRVVDYEEAKQY 155



 Score = 56.0 bits (129), Expect = 1e-09
 Identities = 24/53 (45%), Positives = 38/53 (71%)
 Frame = +2

Query: 95  KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIW 253
           K+++LG+S VGK+SL+ +FV  +F    ++TIGA FLT+ + +DD  V  +IW
Sbjct: 26  KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIW 78



 Score = 30.3 bits (65), Expect = 0.080
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 498 EQERIPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQIKLN 644
           +  R+ + ETSAK AVNV   F  IA+     E      N  P Q + N
Sbjct: 157 DDNRLLFMETSAKTAVNVNDIFLAIAKKLPKNEGAGPQQNIRPTQNETN 205


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +2

Query: 92  LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWVLLAKN 271
           +K +++GD  VGKT ++  +    F  +Y  T   D  +  ++VD   V++ +W    + 
Sbjct: 7   IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPT-SFDNYSAPMVVDGVQVSLGLWDTAGQE 65

Query: 272 GSNRLE*LS 298
             +RL  LS
Sbjct: 66  DYDRLRPLS 74


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 104 ILGDSGVGKTSLMN 145
           ++G SG GKT+L+N
Sbjct: 131 VMGSSGAGKTTLLN 144


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 104 ILGDSGVGKTSLMN 145
           ++G SG GKT+L+N
Sbjct: 131 VMGSSGAGKTTLLN 144


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 104 ILGDSGVGKTSLMN 145
           ++G SG GKT+L+N
Sbjct: 109 VMGSSGAGKTTLLN 122


>AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative
           deoxynucleoside kinase protein.
          Length = 245

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 65  KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSN 172
           K+ +  K    V + G+ G GKT+ +N F  +KF++
Sbjct: 8   KLGASGKKPFTVFVEGNIGSGKTTFLNHF--QKFND 41


>AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate
           deoxyribonucleoside kinaseprotein.
          Length = 246

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 65  KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSN 172
           K+ +  K    V + G+ G GKT+ +N F  +KF++
Sbjct: 8   KLGASGKKPFTVFVEGNIGSGKTTFLNHF--QKFND 41


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 908,764
Number of Sequences: 2352
Number of extensions: 17605
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93439926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)