Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120575.Seq
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.23 
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   3.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 333 RNCPQHV*VLRELERRIPD 389
           +N PQH  +LREL ++IPD
Sbjct: 376 QNHPQHPDILRELLKKIPD 394


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 279 LEPFLASSTHICIVTILS-STITSF 208
           L PFL+SS    IVT L+ ST+  F
Sbjct: 2   LSPFLSSSVSTVIVTALTPSTLGRF 26


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 599 GFLCQCVACYCLKS*LYIDSFFGTCLKIRDA 507
           G     +    L S +++ SFFG C  IR++
Sbjct: 47  GLAFPSITLIVLGSIIFVISFFGCCGAIRES 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,451
Number of Sequences: 438
Number of extensions: 5119
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)