Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120574.Seq
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    30   0.44 
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    28   1.8  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   7.2  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   9.6  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   9.6  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 61   KNNSCQCTVLKLLHV*ICTFYCNESY---STLLVTSINVIHHYLPGFFGLCDCALPSL 225
            K   C CT + L ++ +C  + NE++     L +T +  ++ ++  F G+  C L S+
Sbjct: 1038 KTYVCLCTTIGLCNIYLC--FANENHIISRCLQITRLPTLYRFIILFMGVISCCLTSI 1093


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 605  HRRRRRQRTEILVVNRLLIGNTLEWSDVT 691
            H RR  +R    VVN   +GNT  ++ VT
Sbjct: 1264 HTRRNGERNRFSVVNGCFLGNTYAFASVT 1292


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 374 SVNSLTHTITSTTVASVIP 430
           S  + TH++TST + S++P
Sbjct: 53  STETSTHSVTSTNITSIVP 71


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 708 NCANCVVTSDHSKVFPMS 655
           NC NC+V  D   V P+S
Sbjct: 194 NCENCLVIDDELNVLPIS 211


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 358 KLALFERSKLVATGT*ARVNRIHFDVF 278
           +LA  ER KL+         + HFDVF
Sbjct: 381 QLAFVERCKLIVNDALILAKKFHFDVF 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,413,546
Number of Sequences: 5004
Number of extensions: 71289
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)