Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120574.Seq
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0141 - 4889020-4889191,4889401-4889675                           31   1.1  
04_04_0986 - 29931302-29932834                                         29   4.4  
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592     29   4.4  

>09_02_0141 - 4889020-4889191,4889401-4889675
          Length = 148

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +1

Query: 628 HRNISSKPAAHWKYF--GVV--RCDNTIRTIIGNEKFVRRRLAELCTLYTP 768
           H  +   P A+ +Y   G V  RCDN  R +I   KF  +RL +L   +TP
Sbjct: 70  HALVYENPEANGRYLCVGAVLHRCDNKSRPLIKPYKFSNKRLRDLGLEFTP 120


>04_04_0986 - 29931302-29932834
          Length = 510

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 196 GLCDCALPSLYKRSPTRAVILCQDVQRRKHR 288
           G+CD  L +++ R P RA + C  + +   R
Sbjct: 48  GMCDDVLRNIFSRLPARAAVACTALSKHHRR 78


>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
          Length = 853

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 127 NESYSTLLVTSINVIHHYLPGFFGLCDCALPSLYKRS 237
           +E  +T+  T+ +  HH+   +FGL  CAL  L++RS
Sbjct: 4   SECAATMPATTAHHHHHHAVAYFGL-SCALAVLHRRS 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,072,656
Number of Sequences: 37544
Number of extensions: 424489
Number of successful extensions: 1155
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)