Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120574.Seq
         (807 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_31768| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)            30   2.5  
SB_16556| Best HMM Match : IRK (HMM E-Value=0.87)                      29   5.9  
SB_8444| Best HMM Match : BRE (HMM E-Value=6.4)                        29   5.9  
SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_37257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 314 ISACEQNSFRCFRL*TSWHNMT 249
           I ACE N+ RC+RL   WH+ T
Sbjct: 652 IIACEYNNIRCYRLQFRWHSFT 673


>SB_31768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 762 VQCAQLGQTSPYKLFVANNCANCVVTSDHSKVFPMSSRFT 643
           +QC +L    P+K+  ++ CA C V       +P ++R+T
Sbjct: 473 IQCPRLDCPKPFKMHPSDCCAQCPVCKFGQNTYPNNARWT 512


>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
          Length = 524

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
 Frame = +1

Query: 193 FGLCDCALPSLYKRSPTRAVILCQD--VQRRKHRNEFCSHALMCQ*QPICSVQKAPACRA 366
           F   DCA  ++  R   R+V    D      +H    C+H      QP+ +VQ  P    
Sbjct: 383 FHQTDCAHCTVTTRQTVRSVQTPPDRLCALYRHHQTDCAHCTDTTRQPVHTVQSPP---- 438

Query: 367 GRFCEQFDAHHHFDHCCQC-DSKKLSRKTPKNMPHNI 474
            R C  +   HH   C  C D+ + + +T +  P  +
Sbjct: 439 DRLCALY--RHHPTDCAHCIDTTRQTVRTVQTPPDRL 473


>SB_16556| Best HMM Match : IRK (HMM E-Value=0.87)
          Length = 313

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = -3

Query: 448 FFLIIFWNHTGNSGRSDGVRQTVHRTDRHG-------KLALFERSKLVATGT*ARVNRI 293
           +FL+ F  +TG+S R  G   T  + +R         K AL E+ K V TGT    N I
Sbjct: 173 YFLLYFLQYTGSSSRHFGRSATERQQNRRSYYSHERTKEALQEQKKTVITGTCHTFNSI 231


>SB_8444| Best HMM Match : BRE (HMM E-Value=6.4)
          Length = 502

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 314 CASSNQFAPFKKRQLAVPVGSVNSLTHTITSTTVASVIPKN 436
           C++SNQ      R  A  +G++  LTH +T T V     +N
Sbjct: 146 CSTSNQQRKGLIRNNAAGIGTLYDLTHHVTRTNVVRTTVRN 186


>SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
 Frame = +2

Query: 260 ARTFKGENIEMNSVHTRLCASSNQF------APFKKRQLAVPVGSVNSLTHTITSTTVAS 421
           AR+F+ EN E+     + CA ++ F      A  +   LA     VN  +    +T   +
Sbjct: 311 ARSFRQENDELQIRDKKACAKTSSFKNSTIKAWPRNTSLAASSRIVNDFSTESNNTNAEA 370

Query: 422 VIPKNYQEKRQKICHIISSLRNTHLNFNK 508
           +   N    R       +S+R+ H   NK
Sbjct: 371 MFTSNVNNYRSYSVKPSNSMRSQHETLNK 399


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,789,525
Number of Sequences: 59808
Number of extensions: 544613
Number of successful extensions: 1497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)