Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120573.Seq
(850 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 32 0.68
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08) 31 1.2
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30) 31 1.6
SB_48285| Best HMM Match : Torsin (HMM E-Value=0) 29 3.6
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09) 29 4.8
SB_37232| Best HMM Match : EGF (HMM E-Value=1) 29 4.8
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24) 28 8.3
SB_4456| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 156
Score = 31.9 bits (69), Expect = 0.68
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 300 CMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 425
C + R S V +CGHSC C+ C + VN CP+C+
Sbjct: 28 CDQYRTSKMKLVPVVMPNCGHSC-CSTCAKRVN--RKCPECR 66
>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 339 VTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 434
V L+CGH C C C + + + CP C+ I
Sbjct: 548 VVLLNCGHVCSCRTCAQQI---HQCPVCRGDI 576
>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
Length = 317
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 285 AVDSACMRCRRSFAVYPAVTYLHCG-HSCLCTDCDETVNVDN 407
A + C C+ F+ + Y G H C+C +C+ET + +N
Sbjct: 225 ATKNKCASCQTEFSRSKDLKYHEKGCHPCVCNECNETFDHEN 266
>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
Length = 514
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 309 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIR 437
C+ + +L CGH C C E + + CP C++ IR
Sbjct: 473 CKICMDAEVGIVFLPCGHLSCCPGCAEGMEL---CPMCRAPIR 512
>SB_48285| Best HMM Match : Torsin (HMM E-Value=0)
Length = 636
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 246 RQKLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNV 401
+Q+ P C+ K+ C+ +FA+ YLH LC D + T N+
Sbjct: 318 KQQTPQQVVCHKKSNRLLCVFMTVAFAIALGSVYLHLNPHGLCLDGEFTANL 369
>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 292 TVHACVAEEVSQFTPPLPICIADIRVCAPIATKR*TWTIRV 414
+VH C A V++FT L +C+ + CA + R T +R+
Sbjct: 411 SVHTCAALVVARFTLVLRLCL-PVHTCAALVFARFTLALRL 450
>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
Length = 765
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 348 LHCGHSCLCTDCDETVNVDNTCPKCKSGIR 437
L C H+C+C C +++ CP C+ IR
Sbjct: 701 LPCRHACVCGSCFS--RLESKCPLCRQVIR 728
>SB_37232| Best HMM Match : EGF (HMM E-Value=1)
Length = 79
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 354 CGHSCLCTDCDETVNVDNTCPKCKSGIRYKLK 449
C + C + + VN TCP C G+R ++K
Sbjct: 3 CANGGTCNNGADNVNNTCTCPVCLKGVRCEMK 34
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +3
Query: 348 LHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLKYKTL*HVALRNGDFRVGLLVPAQILN 527
++CGH+CL T T + + C G+ ++ + +R+ +G+LVP I N
Sbjct: 787 IYCGHTCL-TLAVATEHEEFVAHTCCQGLLTEIWMGAMRSANMRSMKILLGILVPPFIFN 845
Query: 528 LNLPLAYQKSVL 563
+ + S L
Sbjct: 846 VEFKTRKELSQL 857
>SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24)
Length = 1039
Score = 28.3 bits (60), Expect = 8.3
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Frame = +2
Query: 122 YLRCTTRPSIG-TAARCS--RC------GATTD--V*LTLRAFATKRWKSLRPTEIAAQH 268
YL S+G T ARC+ RC G T V L R T R+ L + +
Sbjct: 297 YLSFKADSSVGETEARCAMERCTRAIFKGTTRKEIVRLNFRKNVTTRYVELTVVTVLFDY 356
Query: 269 ---RMQCEGCRQCMHALQKKFRSLPRRYLSALRT 361
RM+ GCR C AL +S+P ++A T
Sbjct: 357 PSLRMELYGCRVCERALGMAGKSIPDSSITASST 390
>SB_4456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 229 LEIIKTDRNCRSTQNAM*RLSTVHACVAEEVSQFTPPL-PICIADIRVCAPIATKR*TWT 405
+ + D+NC N + +L AC + E + F L P+ + TW
Sbjct: 332 VRVSHNDKNCMMDMNDLIKLIKYSACASTEPATFPTQLQPMGFLWCKQQKCHCYMAATWN 391
Query: 406 IRVLNVKAA 432
IR +N KAA
Sbjct: 392 IRAMNRKAA 400
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,160,160
Number of Sequences: 59808
Number of extensions: 511578
Number of successful extensions: 1605
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -