Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120573.Seq
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70205-2|CAA94116.1|  529|Caenorhabditis elegans Hypothetical pr...    34   0.15 
U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical pr...    34   0.15 
U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical pr...    34   0.15 
Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical...    31   1.4  
Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U08022-1|AAA17722.1|  515|Caenorhabditis elegans STE12 transcrip...    29   5.5  
AL110501-5|CAB54505.1|  552|Caenorhabditis elegans Hypothetical ...    29   5.5  
AC006620-3|AAF39779.2|  579|Caenorhabditis elegans Hypothetical ...    29   5.5  
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81562-7|CAB04561.1|  367|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone...    28   9.6  
U41104-3|AAK18975.1|  378|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>Z70205-2|CAA94116.1|  529|Caenorhabditis elegans Hypothetical
           protein C11H1.3 protein.
          Length = 529

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 348 LHCGHSCLCTDCDETVNV-DNTCPKCKSGIRYKLKYKTL*HVALRNGDFRVGLLV 509
           L C H C+C++C +++    N CP C+S  R  ++ +   H   RN  +    LV
Sbjct: 282 LPCRHLCVCSNCADSLRYKHNNCPICRSPFRALIRLRA--HRQTRNQIYETVSLV 334


>U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical
           protein F10D7.5c protein.
          Length = 437

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 354 CGHSCLCTDCD-ETVNVDNTCPKCKSGIRYKLK-YKT 458
           CGH C+C +C    +    TCP C++ ++  +K YK+
Sbjct: 401 CGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTYKS 437


>U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical
           protein F10D7.5a protein.
          Length = 617

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 354 CGHSCLCTDCD-ETVNVDNTCPKCKSGIRYKLK-YKT 458
           CGH C+C +C    +    TCP C++ ++  +K YK+
Sbjct: 581 CGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTYKS 617


>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 309 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLK 449
           C   FA   + T L C H   C+DC    N+ + CP C+  I  +++
Sbjct: 564 CTICFAAPGSTTLLPCNHDGFCSDC---CNMMDHCPLCRKPIEERIQ 607


>Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical
           protein T02C1.1 protein.
          Length = 160

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 291 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDET-VNVDNTCPKCKS 428
           D  C  C   F V P +  + CGHS  C  C E+ +N++  CP C++
Sbjct: 5   DFCCAVCL-DFFVEPCI--IECGHS-YCRFCIESHLNINEKCPLCRA 47


>U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical
           protein R02E12.4 protein.
          Length = 639

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +3

Query: 243 DRQKLPLNTECNVKAVDSACMRCRRSFAV-YPAVTYLHCGHSCLCTDC-DETVNVDNTCP 416
           + Q + + +  + ++++   ++C   F V +  VT+L C HS +C  C    ++  + CP
Sbjct: 4   EEQVVEMLSNLDFESLEFEDVQCHICFQVNHEPVTFLTCKHS-ICAGCAGRWLSSCSVCP 62

Query: 417 KCKSGIR 437
            C++ +R
Sbjct: 63  MCRTRVR 69


>AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical
           protein Y47D3A.22 protein.
          Length = 765

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 354 CGHSCLCTDCDETVNVDNTCPKCKSGI 434
           CGH   C DC E V +   CP C+  I
Sbjct: 623 CGHRVACVDCTEKVAI-RRCPVCRQFI 648


>Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical
           protein F55A11.3 protein.
          Length = 610

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +3

Query: 252 KLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSG 431
           + P+ +  ++ A+D+ C+ CR    V  +   L C H               TCP C++ 
Sbjct: 276 QFPVVSAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTD 335

Query: 432 I 434
           I
Sbjct: 336 I 336


>U08022-1|AAA17722.1|  515|Caenorhabditis elegans STE12
           transcriptional activator protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = -2

Query: 306 ACMHCRQPSHCILC*AAISVGLNDFQRFVANARKVNYTSVVAPHREHLAAVPIDGRVVQR 127
           AC HC   + C+L    I      F     +  K   TSV  P  E L A PIDG   ++
Sbjct: 19  ACFHCMFFATCLLLVTLIGFY---FLAATPDLFKKTETSVNKPQMEALLAQPIDGS-SEK 74

Query: 126 R*RASQNSKRLRLNATVVHVVE 61
              +++N   + +    V VVE
Sbjct: 75  TINSAENPGMMAIPLARVVVVE 96


>AL110501-5|CAB54505.1|  552|Caenorhabditis elegans Hypothetical
           protein Y79H2A.1a protein.
          Length = 552

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = -2

Query: 306 ACMHCRQPSHCILC*AAISVGLNDFQRFVANARKVNYTSVVAPHREHLAAVPIDGRVVQR 127
           AC HC   + C+L    I      F     +  K   TSV  P  E L A PIDG   ++
Sbjct: 56  ACFHCMFFATCLLLVTLIGFY---FLAATPDLFKKTETSVNKPQMEALLAQPIDGS-SEK 111

Query: 126 R*RASQNSKRLRLNATVVHVVE 61
              +++N   + +    V VVE
Sbjct: 112 TINSAENPGMMAIPLARVVVVE 133


>AC006620-3|AAF39779.2|  579|Caenorhabditis elegans Hypothetical
           protein C51G7.4 protein.
          Length = 579

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = -2

Query: 306 ACMHCRQPSHCILC*AAISVGLNDFQRFVANARKVNYTSVVAPHREHLAAVPIDGRVVQR 127
           AC HC   + C+L    I      F     +  K   TSV  P  E L A PIDG   ++
Sbjct: 83  ACFHCMFFATCLLLVTLIGFY---FLAATPDLFKKTETSVNKPQMEALLAQPIDGS-SEK 138

Query: 126 R*RASQNSKRLRLNATVVHVVE 61
              +++N   + +    V VVE
Sbjct: 139 TINSAENPGMMAIPLARVVVVE 160


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 220 CECPQSQLHVCCSAAP*TPCSRA 152
           C C Q+     CS  P TPCS A
Sbjct: 38  CSCQQASQQYSCSCQPSTPCSCA 60


>Z81562-7|CAB04561.1|  367|Caenorhabditis elegans Hypothetical
           protein K03D7.11 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 452 VFQFISNAAFTFRTRIVHVYRFVAIGAQTRMSAMQIGNGGVNCETSS 312
           VF +  +A+FT  T  + V+  VAI     +    + NG +NC T +
Sbjct: 113 VFSYNVSASFTRITEKISVWLAVAIAVIRTLVMRYLVNGRINCWTDA 159


>U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 45 protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 543 PKEDLNLKSAPAQVNQHGNHHFVG-QHVTKFCISIYI 436
           P +D  +++ P  +     +H++  +H+ +FC+SI +
Sbjct: 291 PDQDKMIENVPLDMENFMRNHYIEIEHIARFCMSIRV 327


>U41104-3|AAK18975.1|  378|Caenorhabditis elegans Hypothetical
           protein T12C9.1 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 297 ACMRCRRSF--AVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 425
           AC  C   F  +V  + TYL  G++    DCD TVN+   C  C+
Sbjct: 29  ACRACAAFFRRSVSQSKTYLCQGNN----DCDVTVNIRCMCRACR 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,483,823
Number of Sequences: 27780
Number of extensions: 377972
Number of successful extensions: 1092
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)