Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120573.Seq
(850 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79110.2 68414.m09225 expressed protein 40 0.002
At1g79110.1 68414.m09224 expressed protein 40 0.002
At3g12920.1 68416.m01610 expressed protein 38 0.008
At5g47050.1 68418.m05798 expressed protein 36 0.034
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 36 0.034
At4g19700.1 68417.m02893 expressed protein 36 0.034
At1g60610.2 68414.m06823 expressed protein 36 0.045
At1g60610.1 68414.m06822 expressed protein 36 0.045
At1g59560.1 68414.m06698 expressed protein contains similarity t... 35 0.059
At5g45100.2 68418.m05534 expressed protein 35 0.079
At5g45100.1 68418.m05533 expressed protein 35 0.079
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa... 35 0.079
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 35 0.079
At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa... 35 0.079
At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger) fa... 35 0.079
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 33 0.18
At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa... 33 0.18
At4g31450.1 68417.m04469 zinc finger (C3HC4-type RING finger) fa... 33 0.24
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 33 0.24
At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa... 33 0.32
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa... 32 0.42
At1g45976.1 68414.m05206 expressed protein 32 0.42
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa... 32 0.42
At5g04460.1 68418.m00443 expressed protein 32 0.55
At1g10650.1 68414.m01207 expressed protein 32 0.55
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa... 31 0.73
At4g17680.1 68417.m02641 expressed protein 31 0.73
At4g35070.1 68417.m04978 expressed protein 31 0.97
At2g39810.1 68415.m04890 expressed protein 31 0.97
At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa... 31 0.97
At4g03000.2 68417.m00408 expressed protein contains similarity t... 31 1.3
At4g03000.1 68417.m00407 expressed protein contains similarity t... 31 1.3
At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger) fa... 31 1.3
At1g80400.1 68414.m09412 zinc finger (C3HC4-type RING finger) fa... 31 1.3
At1g19680.1 68414.m02453 expressed protein 31 1.3
At5g64970.1 68418.m08172 mitochondrial substrate carrier family ... 30 1.7
At4g32600.1 68417.m04642 zinc finger (C3HC4-type RING finger) fa... 30 1.7
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 30 2.2
At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 30 2.2
At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger) fa... 30 2.2
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 29 3.0
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein... 29 3.0
At2g21380.1 68415.m02544 kinesin motor protein-related 29 3.0
At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger) fa... 29 3.0
At1g49220.1 68414.m05518 zinc finger (C3HC4-type RING finger) fa... 29 3.0
At1g30860.1 68414.m03774 expressed protein 29 3.0
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa... 29 3.9
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa... 29 3.9
At1g72450.1 68414.m08378 expressed protein 29 3.9
At1g17145.1 68414.m02090 expressed protein 29 3.9
At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH) domain... 29 3.9
At5g01450.1 68418.m00058 expressed protein 29 5.2
At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger) fa... 29 5.2
At3g18773.1 68416.m02383 zinc finger (C3HC4-type RING finger) fa... 29 5.2
At3g17500.1 68416.m02235 F-box family protein contains Pfam prof... 29 5.2
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 29 5.2
At5g44690.1 68418.m05476 hypothetical protein 28 6.8
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At1g78420.1 68414.m09138 expressed protein 28 9.0
At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putati... 28 9.0
>At1g79110.2 68414.m09225 expressed protein
Length = 355
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/74 (33%), Positives = 30/74 (40%)
Frame = +3
Query: 207 CGHSQQNAGNH*DRQKLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCD 386
CG S G R+++ L E KA CR V L C H CLC C
Sbjct: 273 CGSSCGGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCG 332
Query: 387 ETVNVDNTCPKCKS 428
+V +TCP C S
Sbjct: 333 SSV---HTCPICTS 343
>At1g79110.1 68414.m09224 expressed protein
Length = 358
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/74 (33%), Positives = 30/74 (40%)
Frame = +3
Query: 207 CGHSQQNAGNH*DRQKLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCD 386
CG S G R+++ L E KA CR V L C H CLC C
Sbjct: 276 CGSSCGGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCG 335
Query: 387 ETVNVDNTCPKCKS 428
+V +TCP C S
Sbjct: 336 SSV---HTCPICTS 346
>At3g12920.1 68416.m01610 expressed protein
Length = 335
Score = 37.9 bits (84), Expect = 0.008
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = +3
Query: 207 CGHSQQNAGNH*DRQKLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCD 386
CG + + +R KL + K CR +V L C H CLC+ C
Sbjct: 254 CGSNDEGDSEE-ERWKLAGEAQDTKKMCRVGMSMCRSCGKGEASVLLLPCRHMCLCSVCG 312
Query: 387 ETVNVDNTCPKCKS 428
++ NTCP CKS
Sbjct: 313 SSL---NTCPICKS 323
>At5g47050.1 68418.m05798 expressed protein
Length = 300
Score = 35.9 bits (79), Expect = 0.034
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 279 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 428
V+ + C CRR A V L C H +CT+CD +V + CP C S
Sbjct: 246 VEMIGPGCRICRRRSAT---VLALPCRHLVMCTECDGSVRI---CPLCLS 289
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 35.9 bits (79), Expect = 0.034
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 354 CGHSCLCTDCDETVNVD-NTCPKCKSGIRYKLKYK 455
C H CLC+DC E + N CP C+ I +K K
Sbjct: 336 CRHLCLCSDCAEELRFQTNKCPICRQPIHELVKIK 370
>At4g19700.1 68417.m02893 expressed protein
Length = 304
Score = 35.9 bits (79), Expect = 0.034
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = +3
Query: 279 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 422
V AV C RC A +V L C H CLCT C + + TCP C
Sbjct: 247 VTAVGGGCKRCGEREA---SVLVLPCRHLCLCTVCGGSALL-RTCPVC 290
>At1g60610.2 68414.m06823 expressed protein
Length = 340
Score = 35.5 bits (78), Expect = 0.045
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 276 NVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 428
N+ + S MRC+ +V + C H LC DCD V CP C+S
Sbjct: 282 NIPGMPSTGMRCKLCNVKNVSVLLVPCRHLSLCKDCDVFTGV---CPVCQS 329
>At1g60610.1 68414.m06822 expressed protein
Length = 340
Score = 35.5 bits (78), Expect = 0.045
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 276 NVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 428
N+ + S MRC+ +V + C H LC DCD V CP C+S
Sbjct: 282 NIPGMPSTGMRCKLCNVKNVSVLLVPCRHLSLCKDCDVFTGV---CPVCQS 329
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 35.1 bits (77), Expect = 0.059
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 345 YLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLK 449
++ CGH C CT C + TCP C+ I+ LK
Sbjct: 303 FVECGHMCCCTPCSLQL---RTCPLCRERIQQVLK 334
>At5g45100.2 68418.m05534 expressed protein
Length = 267
Score = 34.7 bits (76), Expect = 0.079
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 288 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 422
V+ C RC A +V L C H CLCT C + + TCP C
Sbjct: 213 VNGGCKRCGELTA---SVLVLPCRHLCLCTVCGSSALL-RTCPVC 253
>At5g45100.1 68418.m05533 expressed protein
Length = 294
Score = 34.7 bits (76), Expect = 0.079
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 288 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 422
V+ C RC A +V L C H CLCT C + + TCP C
Sbjct: 240 VNGGCKRCGELTA---SVLVLPCRHLCLCTVCGSSALL-RTCPVC 280
>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 359
Score = 34.7 bits (76), Expect = 0.079
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 348 LHCGHSCLCTDCDETVNV-DNTCPKCKSGIRYKLKYK 455
L C H C+C+DC + + + N CP C+ I L+ K
Sbjct: 315 LPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEIK 351
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 34.7 bits (76), Expect = 0.079
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +3
Query: 222 QNAGNH*DRQKLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNV 401
++ G++ R+ + +T+ AV C+ C Y AV ++ CGH C CT C +
Sbjct: 271 ESEGSNGTRESISDSTK-KEDAVPDLCVICLEQ--EYNAV-FVPCGHMCCCTACSSHL-- 324
Query: 402 DNTCPKCKSGIRYKLKYKTL*H 467
+CP C+ R L KT H
Sbjct: 325 -TSCPLCRR--RIDLAVKTYRH 343
>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q06003 Goliath
protein (G1 protein) {Drosophila melanogaster}; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 381
Score = 34.7 bits (76), Expect = 0.079
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 291 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLKYK 455
D+ C C ++ + L CGH C D+ + ++ TCP CK I Y+
Sbjct: 322 DAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSSNYE 376
>At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9NVW2 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Homo sapiens}; contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 34.7 bits (76), Expect = 0.079
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 291 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 434
D+ C C ++ + L CGH C+ D+ + ++ TCP CK I
Sbjct: 310 DAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNI 357
>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 327
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 318 SFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 425
++++YP + H GH+ LC+ C V V N CP C+
Sbjct: 68 TYSMYPPIHQCHNGHT-LCSTC--KVRVHNRCPTCR 100
>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHG1a
GI:3822225 from [Arabidopsis thaliana]; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 494
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 300 CMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 428
C C+ SF + L CGH ++ + V N CP CKS
Sbjct: 442 CTICQESFKNEEKIATLDCGHEYHAECLEKWLIVKNVCPICKS 484
>At4g31450.1 68417.m04469 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 497
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 291 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 428
D+ C C+ + + V LHC H+ E + + + CP CK+
Sbjct: 445 DAKCSICQEEYTIGDEVGRLHCEHTYHVKCVQEWLRIKSWCPICKA 490
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 TYLHCGHSCLCTDCDETVNVD-NTCPKCKSGIRYKLKYK 455
T L C H C+C+ C + + N CP C+ + L+ K
Sbjct: 330 TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 368
>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9WTV7 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Mus musculus}; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 390
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 270 ECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 434
E ++ D+ C C + + L C H CT D+ +++++ CP CK I
Sbjct: 328 ERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNI 382
>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
family protein contains weak similarity to zinc finger
proteins
Length = 337
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 342 TYLHCGHSCLCTDCDETVNVD-NTCPKCKSGIRYKLK 449
T L C H C+C+ C + + N CP C+ + L+
Sbjct: 296 TVLPCRHMCMCSGCAKALRFQTNLCPVCRQPVEMLLE 332
>At1g45976.1 68414.m05206 expressed protein
Length = 325
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 303 MRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 428
M CR + L C H CLC +C+ + ++CP C+S
Sbjct: 277 MMCRFCGVREMCMLLLPCNHMCLCKECERKL---SSCPLCQS 315
>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 645
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 180 ALQQTCN*LC-GHSQQNAGNH*DRQKLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHC 356
+L++ +C G +++ N +QK +T + + V+ C+ C+ + + L C
Sbjct: 553 SLEERIGDVCTGLNEETISNRLKQQKYKSSTRSS-QEVEPCCV-CQEEYKEEEEIGRLEC 610
Query: 357 GHSCLCTDCDETVNVDNTCPKCKS 428
GH E + N CP CK+
Sbjct: 611 GHDFHSQCIKEWLKQKNLCPICKT 634
>At5g04460.1 68418.m00443 expressed protein
Length = 863
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 354 CGHSCLCTDC-DETVNVDNTCPKCKSGI 434
CGH C C+ C +E V CP C++ I
Sbjct: 826 CGHMCTCSKCANELVRNGGKCPLCRAPI 853
>At1g10650.1 68414.m01207 expressed protein
Length = 339
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 303 MRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 428
MRC+ +V + C H LC +CD + CP CKS
Sbjct: 290 MRCKMCNVKEVSVLIVPCRHLSLCKECDVFTKI---CPVCKS 328
>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 691
Score = 31.5 bits (68), Expect = 0.73
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +3
Query: 180 ALQQTCN*LC-GHSQQNAGNH*DRQKLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHC 356
AL++ +C G +++ N ++K NT+ A C C+ + + L C
Sbjct: 598 ALEERIGDVCTGVNEETISNRLKQRKYKSNTKSPQDA--EPCCVCQEEYTEGEDMGTLEC 655
Query: 357 GHSCLCTDCDETVNVDNTCPKCKS 428
GH E + N CP CK+
Sbjct: 656 GHEFHSQCIKEWLKQKNLCPICKT 679
>At4g17680.1 68417.m02641 expressed protein
Length = 314
Score = 31.5 bits (68), Expect = 0.73
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 279 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 422
++ + +C CRR A A L C H LC CD V CP C
Sbjct: 260 IELIGPSCRICRRKSATVMA---LPCQHLILCNGCD--VGAVRVCPIC 302
>At4g35070.1 68417.m04978 expressed protein
Length = 265
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 288 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 428
+ S C C + V +L C H C C DC+E + + CP C +
Sbjct: 213 MSSCCCNCGSNGVT--RVLFLPCRHLCCCMDCEEGLLL---CPICNT 254
>At2g39810.1 68415.m04890 expressed protein
Length = 865
Score = 31.1 bits (67), Expect = 0.97
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 354 CGHSCLCTDCDETVNVDNTCPKCKS 428
CGH+ LCT+C + +V CP C+S
Sbjct: 73 CGHASLCTECCQRCDV---CPICRS 94
>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 288 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 425
VD C C+ + V L+CGHS + ++ N CP CK
Sbjct: 316 VDRKCSICQDEYEREDEVGELNCGHSFHVHCVKQWLSRKNACPVCK 361
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 336 AVTYLHCGHSCLCTDCDETVNVD--NTCPKCKSGIRYKLK 449
+V +L C H LC+ C++ + CP C++ I+ +++
Sbjct: 769 SVIFLPCAHQVLCSKCNQLHEKEAMEDCPSCRAKIQRRIQ 808
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 336 AVTYLHCGHSCLCTDCDETVNVD--NTCPKCKSGIRYKLK 449
+V +L C H LC+ C++ + CP C++ I+ +++
Sbjct: 769 SVIFLPCAHQVLCSKCNQLHEKEAMEDCPSCRAKIQRRIQ 808
>At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 299
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 342 TYLHCGHSCLCTDCDETVNVD-NTCPKCKSGI 434
T L C H C+C+ C + + N CP C+ +
Sbjct: 254 TVLPCRHMCMCSGCAKLLRFQTNLCPICRQPV 285
>At1g80400.1 68414.m09412 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q90972 RING finger
protein 13 {Gallus gallus}; contains Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 407
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 279 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDC-DETVNVDNTCPKCKSGI 434
+ D++C C + V L C H DC D+ + ++ TCP CK+ +
Sbjct: 348 ISGEDASCCICLTRYGDDEQVRELPCSH-VFHVDCVDKWLKINATCPLCKNEV 399
>At1g19680.1 68414.m02453 expressed protein
Length = 444
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +3
Query: 333 PAVTYLHCGH----SCLCTDCDETVNVDNTCPKCKSGIRYKLKYKTL 461
P L CGH +CL T +ET D TCP C KL K L
Sbjct: 292 PIPAVLACGHVYHAACLETMTNETEKYDPTCPICTETQVTKLSRKAL 338
>At5g64970.1 68418.m08172 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 428
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -2
Query: 243 LNDFQRFVANARKVNYTSVVAPHREHLAAVPIDGRVVQRR*RASQNSKRLRLNATVVHVV 64
LN F + + +A A P + VV+RR + ++KRL AT V ++
Sbjct: 328 LNAFDQLELGPMRTLLYGAIAGACSEAATYPFE--VVRRRLQMQSHAKRLSAVATCVKII 385
Query: 63 ERGG 52
E+GG
Sbjct: 386 EQGG 389
>At4g32600.1 68417.m04642 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING finger protein 38
[Homo sapiens] GI:21666412; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +3
Query: 264 NTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYK 443
+ E + D+ C C +A + L C H D+ + ++ +CP CKS + K
Sbjct: 351 DNERAISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLCKSEVGEK 410
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 303 MRCRRSFAVYPAVTYLHCGHSCLCTDCD-ETVNVDNTCPKCK 425
++C ++Y + L C H C C +++ +D TCP CK
Sbjct: 349 LKCPICLSLYNSAVSLSCNH-VFCNACIVKSMKMDATCPVCK 389
>At3g58040.1 68416.m06470 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 308
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 327 VYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 425
+YP + GH+ LC++C + V NTCP C+
Sbjct: 67 MYPPIHQCPNGHT-LCSNCK--LRVQNTCPTCR 96
>At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger) domain
Length = 359
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +3
Query: 255 LPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 434
L L TE + A D+ C C S+ + L C H T + + + TCP CK I
Sbjct: 292 LCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 309 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKL 446
C+ F A L C H CLC C + CP C++ I +L
Sbjct: 1008 CKVCFESPTAAILLPCRHFCLCKSCSLAC---SECPICRTKISDRL 1050
>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 305
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 327 VYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 425
+YP + GH+ LC+ C + V NTCP C+
Sbjct: 64 MYPPIHQCPNGHT-LCSSCK--LRVQNTCPTCR 93
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 309 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKL 446
C+ F A L C H CLC C + CP C++ I +L
Sbjct: 1011 CKVCFESPTATILLPCRHFCLCKSCSLAC---SECPICRTKISDRL 1053
>At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 367
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 291 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 428
D C+ C+ + V L CGH ++ + N+CP CK+
Sbjct: 316 DRKCIICQDEYEAKDEVGELRCGHRFHIDCVNQWLVRKNSCPVCKT 361
>At1g49220.1 68414.m05518 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 251
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 270 ECNVKAVDSACMRCRRSFAVYPAVTYL-HCGHSCLCTDCDETVNVDNTCPKCKS 428
E N+ +D C+ C F + L C H D+ + TCPKC++
Sbjct: 125 EMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRN 178
>At1g30860.1 68414.m03774 expressed protein
Length = 730
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 336 AVTYLHCGHSCLCTDCDETVN-VDNTCPKCKSGI 434
AV Y CGH C+C C ++ CP C++ I
Sbjct: 686 AVLY-RCGHMCMCLKCANELHWSGGKCPICRAQI 718
>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 282 KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN-TCPKCKS 428
K D+ C C F + L CGH T ++ ++ N TCP C++
Sbjct: 97 KQADNECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRT 146
>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 282 KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN-TCPKCKS 428
K D+ C C F + L CGH T ++ ++ N TCP C++
Sbjct: 97 KQADNECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRT 146
>At1g72450.1 68414.m08378 expressed protein
Length = 269
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 558 HFFGMPKEDLNLKSAPAQVNQHGNH 484
H F ++D + AP QVNQHG+H
Sbjct: 193 HRFFAKRKDRAVARAPYQVNQHGSH 217
>At1g17145.1 68414.m02090 expressed protein
Length = 335
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +3
Query: 309 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNT-----CPKCKSGIRYKLKYK 455
C F YP++ C +CT+C + N+ CP CK+ Y ++Y+
Sbjct: 63 CPICFLYYPSLNRSRCCMKSICTECFLRMKSPNSAQPTQCPFCKTS-NYAVEYR 115
>At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain A, Calm-N N-Terminal Domain Of Clathrin
Assembly Lymphoid Myeloid Leukaemia Protein, Pi(4,5)p2
Complex (GP:13399999) {Homo sapiens}
Length = 692
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 296 CMHALQKKFRSLPRRYLSALRTFVFVHRLRRNG 394
C+HAL ++ R + AL+ + +HRL R+G
Sbjct: 71 CIHALSRRLHKT-RNWTVALKALLVIHRLLRDG 102
>At5g01450.1 68418.m00058 expressed protein
Length = 444
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +3
Query: 345 YLHCGHSCLCTDCDETV-NVDNTCPKCKSGIR 437
+L CGH C C + CP C+ IR
Sbjct: 405 FLSCGHCVACFQCGTRIAETSGFCPVCRKKIR 436
>At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 358
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +3
Query: 300 CMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 434
C+ C F + V L C H+ D+ + ++ CP+C+ +
Sbjct: 235 CLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSV 279
>At3g18773.1 68416.m02383 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 220
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +3
Query: 270 ECNVKAVDSACMRCRRSFAVYPAVTYL-HCGHSCLCTDCDETVNVDNTCPKCK 425
E N+ V C+ C F + L C H D+ + TCPKC+
Sbjct: 120 EINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCR 172
>At3g17500.1 68416.m02235 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 438
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 351 HCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLKYKT 458
HC LCT D+ + V N C +++ + YKT
Sbjct: 98 HCDGLLLCTTKDDRLEVWNPCTGQTRRVQHSIHYKT 133
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles
PF00168: C2 domain; contains PF02893: GRAM domain;
similar to Chain A, Crystal Structure Of Synaptotagmin
Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 336 AVTYLHCGHSCLCTDCDETVNVDN--TCPKCKSGIRYKLK 449
+V +L C H LC C++ + CP C+ I +++
Sbjct: 777 SVIFLPCAHQVLCFKCNQLHEKEGMMDCPSCRGTIHRRIQ 816
>At5g44690.1 68418.m05476 hypothetical protein
Length = 684
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +3
Query: 291 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN-TCPKCKSGI 434
DS C F + CGH C C C + N CP C + I
Sbjct: 626 DSLERNCSICFEMPIDSLLYRCGHMCTCLKCAHELQWSNMKCPICMAPI 674
>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 159
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 354 CGHSCLCTDC-DETVNVDNTCPKCKS 428
C H C TDC DE + TCP C++
Sbjct: 113 CNH-CFHTDCVDEWLRTSATCPLCRN 137
>At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 466
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 309 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKL 446
CR F +V L C H LC +C + CP C+ I +L
Sbjct: 419 CRVCFEREISVVLLPCRHRVLCRNCSDKC---KKCPFCRITIEERL 461
>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 248
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 291 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 425
+ C C+ F V L C H + +N+ NTCP C+
Sbjct: 135 EKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR 179
>At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 467
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 309 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKL 446
CR F ++ L C H LC C + TCP C+ I +L
Sbjct: 420 CRVCFEKDISLVLLPCRHRVLCRTCADKC---TTCPICRIDIEKRL 462
>At1g78420.1 68414.m09138 expressed protein
Length = 401
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +3
Query: 309 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNT-----CPKCKSGIRYKLKYK 455
C F YP++ C +CT+C + N+ CP CK+ Y ++Y+
Sbjct: 59 CPICFLYYPSLNRSRCCMKSICTECFLQMKNPNSARPTQCPFCKTP-NYAVEYR 111
>At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putative
/ PEP carboxylase, putative (PPC1) strong similarity to
SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
(PEPCASE) {Solanum tuberosum}; contains Pfam profile
PF00311: phosphoenolpyruvate carboxylase
Length = 967
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 129 AVRLDRRSARLQGVHGAALQQTCN*LCGHSQQNAGNH 239
A+ LDR LQ +HG L++T L HS + G H
Sbjct: 35 ALLLDRFLDILQDLHGEDLRETVQELYEHSAEYEGKH 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,852,866
Number of Sequences: 28952
Number of extensions: 323084
Number of successful extensions: 1121
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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