Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120571.Seq
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 144 1e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 144 1e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 143 2e-35
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 30 0.47
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.61
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 2.5
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 4.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 4.3
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 7.6
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 144 bits (350), Expect = 1e-35
Identities = 64/83 (77%), Positives = 74/83 (89%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRT
Sbjct: 87 MDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146
Query: 436 IRYPDPLIKVNDSIQLDIATTKI 504
IRYPDPLIKVND+I+L++ T KI
Sbjct: 147 IRYPDPLIKVNDTIKLNLETNKI 169
Score = 140 bits (340), Expect = 2e-34
Identities = 62/83 (74%), Positives = 69/83 (83%)
Frame = +2
Query: 5 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 184
RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 185 KIVKQRLIKVDGKVRTDPTYPAG 253
I+ QRLIKVDGKVRTD T+P G
Sbjct: 63 AILMQRLIKVDGKVRTDSTFPTG 85
Score = 120 bits (289), Expect = 3e-28
Identities = 52/84 (61%), Positives = 70/84 (83%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+
Sbjct: 172 FIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGET 231
Query: 690 TKAYISLPRGKGIRLTIAEERDKR 761
K++ISLP+GKG++L+I EERD+R
Sbjct: 232 GKSWISLPKGKGVKLSITEERDRR 255
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 144 bits (350), Expect = 1e-35
Identities = 64/83 (77%), Positives = 74/83 (89%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRT
Sbjct: 87 MDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146
Query: 436 IRYPDPLIKVNDSIQLDIATTKI 504
IRYPDPLIKVND+I+L++ T KI
Sbjct: 147 IRYPDPLIKVNDTIKLNLETNKI 169
Score = 139 bits (336), Expect = 5e-34
Identities = 61/83 (73%), Positives = 69/83 (83%)
Frame = +2
Query: 5 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 184
RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 185 KIVKQRLIKVDGKVRTDPTYPAG 253
I+ QRLI+VDGKVRTD T+P G
Sbjct: 63 AILMQRLIQVDGKVRTDSTFPTG 85
Score = 121 bits (291), Expect = 1e-28
Identities = 52/84 (61%), Positives = 70/84 (83%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+
Sbjct: 172 FIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEA 231
Query: 690 TKAYISLPRGKGIRLTIAEERDKR 761
K++ISLP+GKG++L+I EERD+R
Sbjct: 232 GKSWISLPKGKGVKLSITEERDRR 255
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 143 bits (347), Expect = 2e-35
Identities = 63/83 (75%), Positives = 74/83 (89%)
Frame = +1
Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
MDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRT
Sbjct: 87 MDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146
Query: 436 IRYPDPLIKVNDSIQLDIATTKI 504
IRYPDPLIKVND+I+L++ T KI
Sbjct: 147 IRYPDPLIKVNDTIKLNLETNKI 169
Score = 140 bits (340), Expect = 2e-34
Identities = 62/83 (74%), Positives = 69/83 (83%)
Frame = +2
Query: 5 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 184
RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 3 RGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVK 62
Query: 185 KIVKQRLIKVDGKVRTDPTYPAG 253
I+ QRLIKVDGKVRTD T+P G
Sbjct: 63 AILMQRLIKVDGKVRTDSTFPTG 85
Score = 120 bits (289), Expect = 3e-28
Identities = 52/84 (61%), Positives = 70/84 (83%)
Frame = +3
Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+
Sbjct: 172 FIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGET 231
Query: 690 TKAYISLPRGKGIRLTIAEERDKR 761
K++ISLP+GKG++L+I EERD+R
Sbjct: 232 GKSWISLPKGKGVKLSITEERDRR 255
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 29.9 bits (64), Expect = 0.47
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 459 QSQRFHPVRHCNYEDYGFIKFES 527
++++ HPVRH YED + FE+
Sbjct: 5 ENEKIHPVRHSKYEDKSKLPFET 27
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.61
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -1
Query: 704 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 579
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -2
Query: 253 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 98
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 516 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 620
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 259 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 435
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 436 IR 441
++
Sbjct: 1778 LK 1779
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 263 LSQLRRLMNCFV*SMMLRADSQSTVSPLRRLSTSCVK 373
LS+++ L+NCF+ S + D + LR L +K
Sbjct: 424 LSRIKHLLNCFLNSSTVSLDVSMVLELLRDLKKKKIK 460
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,478,584
Number of Sequences: 5004
Number of extensions: 74750
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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