Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120571.Seq
         (833 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             164   7e-41
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   6.1  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      28   8.1  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  164 bits (399), Expect = 7e-41
 Identities = 74/84 (88%), Positives = 78/84 (92%)
 Frame = +2

Query: 2   ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
           ARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV
Sbjct: 426 ARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEV 485

Query: 182 LKIVKQRLIKVDGKVRTDPTYPAG 253
            KIVKQRLIK+DGKVRTD TYPAG
Sbjct: 486 KKIVKQRLIKIDGKVRTDTTYPAG 509



 Score =  140 bits (340), Expect = 1e-33
 Identities = 57/84 (67%), Positives = 74/84 (88%)
 Frame = +3

Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
           +IKF++GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG
Sbjct: 596 YIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKG 655

Query: 690 TKAYISLPRGKGIRLTIAEERDKR 761
            K Y+SLP+GKG+RL+IAEERD+R
Sbjct: 656 NKPYVSLPKGKGVRLSIAEERDRR 679



 Score =  129 bits (311), Expect = 3e-30
 Identities = 58/84 (69%), Positives = 70/84 (83%)
 Frame = +1

Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
           MDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RT
Sbjct: 511 MDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDART 570

Query: 436 IRYPDPLIKVNDSIQLDIATTKIM 507
           IRYPDP IKVND++ +DI T K++
Sbjct: 571 IRYPDPNIKVNDTVVIDIKTGKVI 594


>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 663 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRT 764
           N + I G  T  +    LPR +G+  TIA+E D+RT
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERT 405


>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1252

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 663 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRT 764
           N + I G  T  +    LPR +G+  TIA+E D+RT
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERT 541


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +1

Query: 142 EES--SEVCFDRKRSPENCE 195
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 241 LSCWIMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 420
           L  W+    S  K N ++  I D+  R  I  +TP+    K C+V R++TGP    +++ 
Sbjct: 261 LGGWVATRASGMKKN-VYGNIEDIIVR--IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMG 317

Query: 421 HDG 429
            +G
Sbjct: 318 SEG 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,746,969
Number of Sequences: 59808
Number of extensions: 637510
Number of successful extensions: 1898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1892
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)