Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120571.Seq
         (833 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   143   1e-34
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             143   1e-34
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   143   1e-34
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.94 
At1g29760.1 68414.m03639 expressed protein                             31   0.94 
At5g16910.1 68418.m01982 cellulose synthase family protein simil...    29   2.9  
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD...    29   3.8  
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ...    29   3.8  
At1g02730.1 68414.m00226 cellulose synthase family protein simil...    29   3.8  
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical...    29   5.0  
At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putativ...    29   5.0  
At4g38190.1 68417.m05391 cellulose synthase family protein simil...    28   8.8  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  143 bits (347), Expect = 1e-34
 Identities = 65/84 (77%), Positives = 73/84 (86%)
 Frame = +2

Query: 2   ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
           ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 182 LKIVKQRLIKVDGKVRTDPTYPAG 253
           + I+ QR I+VDGKVRTD TYPAG
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAG 85



 Score =  129 bits (311), Expect = 3e-30
 Identities = 57/84 (67%), Positives = 70/84 (83%)
 Frame = +3

Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
           FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKG
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKG 231

Query: 690 TKAYISLPRGKGIRLTIAEERDKR 761
           TK ++SLP+GKGI+LTI EE  KR
Sbjct: 232 TKPWVSLPKGKGIKLTIIEEARKR 255



 Score =  124 bits (300), Expect = 6e-29
 Identities = 58/95 (61%), Positives = 69/95 (72%)
 Frame = +1

Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
           MDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRT
Sbjct: 87  MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146

Query: 436 IRYPDPLIKVNDSIQLDIATTKIMASSSLSRGTCV 540
           IRYPDPLIK ND+I+LD+   KI+       G  V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  143 bits (347), Expect = 1e-34
 Identities = 65/84 (77%), Positives = 73/84 (86%)
 Frame = +2

Query: 2   ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
           ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 182 LKIVKQRLIKVDGKVRTDPTYPAG 253
           + I+ QR I+VDGKVRTD TYPAG
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAG 85



 Score =  129 bits (311), Expect = 3e-30
 Identities = 57/84 (67%), Positives = 70/84 (83%)
 Frame = +3

Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
           FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKG
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKG 231

Query: 690 TKAYISLPRGKGIRLTIAEERDKR 761
           TK ++SLP+GKGI+LTI EE  KR
Sbjct: 232 TKPWVSLPKGKGIKLTIIEEARKR 255



 Score =  124 bits (299), Expect = 7e-29
 Identities = 58/95 (61%), Positives = 69/95 (72%)
 Frame = +1

Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
           MDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRT
Sbjct: 87  MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146

Query: 436 IRYPDPLIKVNDSIQLDIATTKIMASSSLSRGTCV 540
           IRYPDPLIK ND+I+LD+   KI+       G  V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  143 bits (347), Expect = 1e-34
 Identities = 65/84 (77%), Positives = 73/84 (86%)
 Frame = +2

Query: 2   ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 181
           ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  EV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 182 LKIVKQRLIKVDGKVRTDPTYPAG 253
           + I+ QR I+VDGKVRTD TYPAG
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAG 85



 Score =  129 bits (311), Expect = 3e-30
 Identities = 57/84 (67%), Positives = 70/84 (83%)
 Frame = +3

Query: 510 FIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 689
           FIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKG
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKG 231

Query: 690 TKAYISLPRGKGIRLTIAEERDKR 761
           TK ++SLP+GKGI+LTI EE  KR
Sbjct: 232 TKPWVSLPKGKGIKLTIIEEARKR 255



 Score =  124 bits (299), Expect = 7e-29
 Identities = 58/95 (61%), Positives = 69/95 (72%)
 Frame = +1

Query: 256 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 435
           MDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRT
Sbjct: 87  MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146

Query: 436 IRYPDPLIKVNDSIQLDIATTKIMASSSLSRGTCV 540
           IRYPDPLIK ND+I+LD+   KI+       G  V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 123 KHSRNLWGPVDGLGAYTPPSLSNIHAL 43
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At1g29760.1 68414.m03639 expressed protein
          Length = 526

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 234 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 142
           S+LTFP   +R CF  F   F    + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225


>At5g16910.1 68418.m01982 cellulose synthase family protein similar
           to gi:2827143 cellulose synthase catalytic subunit,
           Arabidopsis thaliana, gi:9622886 cellulose synthase-7
           from Zea mays
          Length = 1145

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 688 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 593
           PL   NT+ +++A   PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426


>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
           similar to cellulose synthase catalytic subunit
           gi:2827143 from [Arabidopsis thaliana], cellulose
           synthase-7 (gi:9622886) from Zea mays; contains Pfam
           profile PF03552: Cellulose synthase
          Length = 1145

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 688 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 593
           PL   NT+ +++A   PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423


>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
           putative / steroid 5-alpha-reductase, putative identical
           to gi:1280611; contains a steroid 5-alpha reductase,
           C-terminal domain
          Length = 262

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 213 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 97
           TF R C      + P  A   +FL+    GKH+R  WGP
Sbjct: 8   TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45


>At1g02730.1 68414.m00226 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit [gi:13925881]
           from Nicotiana alata, cellulose synthase-4 [gi:9622880]
           from Zea mays
          Length = 1181

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 688 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 593
           PL   NT+ +++A   PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447


>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
           UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
           [Arabidopsis thaliana]; contains Pfam 00415: Regulator
           of chromosome condensation (RCC1)
          Length = 440

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 552 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 710
           G NL +   +  + R P    +V +     HT A T  NNVF  G+GT   + +
Sbjct: 311 GNNLDQCSPV--QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362


>At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putative /
           glutamine phosphoribosylpyrophosphate amidotransferase,
           putative / phosphoribosyldiphosphate 5-amidotransferase,
           putative similar to amidophosphoribosyltransferase
           [Arabidopsis thaliana] GI:469195; contains Pfam profiles
           PF00156: Phosphoribosyl transferase domain, PF00310:
           Glutamine amidotransferases class-II
          Length = 532

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 28/91 (30%), Positives = 39/91 (42%)
 Frame = +3

Query: 399 ECSVLGNA*WPHHPLSRPTYQSQRFHPVRHCNYEDYGFIKFESGNLCMITGGRNLGRVGT 578
           EC V+G    P    SR +Y +   H ++H   E  G +      L  ITG   +  V T
Sbjct: 76  ECGVVGIHGDPE--ASRLSYLA--LHALQHRGQEGAGIVAANQNGLESITGVGLVSDVFT 131

Query: 579 IVSRERHPGSFDIVHIKDSTGHTFATRLNNV 671
                  PG   I H++ ST  + A+ L NV
Sbjct: 132 ESKLNNLPGDIAIGHVRYST--SGASMLKNV 160


>At4g38190.1 68417.m05391 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit gi:2827143 from
           [Arabidopsis thaliana], cellulose synthase-5
           (gi:9622882) from Zea mays
          Length = 1111

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 688 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 593
           PL   NT+ +++A   PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,911,602
Number of Sequences: 28952
Number of extensions: 423454
Number of successful extensions: 1281
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)