Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120569.Seq
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 129 4e-31
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 129 4e-31
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 129 4e-31
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 2e-04
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 33 0.063
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.33
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 30 0.44
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 27 3.1
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 26 5.5
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 129 bits (312), Expect = 4e-31
Identities = 58/85 (68%), Positives = 71/85 (83%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
GK A L VGNV+PVG MP+GTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKL
Sbjct: 90 GKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKL 149
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
PSGAKKV+PSS RG+VGIVAGGGR+
Sbjct: 150 PSGAKKVVPSSARGVVGIVAGGGRI 174
Score = 120 bits (289), Expect = 2e-28
Identities = 49/65 (75%), Positives = 59/65 (90%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KV
Sbjct: 175 DKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKV 234
Query: 689 GLIAA 703
GLIAA
Sbjct: 235 GLIAA 239
Score = 106 bits (254), Expect = 4e-24
Identities = 51/89 (57%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
RAQR+ +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+
Sbjct: 6 RAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRN 64
Query: 182 PYKFKTRKELFIAPEXS-TQANLFIGKES 265
PY ++T E F+A E T ++ GK +
Sbjct: 65 PYHYRTDVETFVATEGMYTGQFVYCGKNA 93
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 129 bits (312), Expect = 4e-31
Identities = 58/85 (68%), Positives = 71/85 (83%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
GK A L VGNV+PVG MP+GTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKL
Sbjct: 90 GKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKL 149
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
PSGAKKV+PSS RG+VGIVAGGGR+
Sbjct: 150 PSGAKKVVPSSARGVVGIVAGGGRI 174
Score = 120 bits (289), Expect = 2e-28
Identities = 49/65 (75%), Positives = 59/65 (90%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KV
Sbjct: 175 DKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKV 234
Query: 689 GLIAA 703
GLIAA
Sbjct: 235 GLIAA 239
Score = 106 bits (254), Expect = 4e-24
Identities = 51/89 (57%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
RAQR+ +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+
Sbjct: 6 RAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRN 64
Query: 182 PYKFKTRKELFIAPEXS-TQANLFIGKES 265
PY ++T E F+A E T ++ GK +
Sbjct: 65 PYHYRTDVETFVATEGMYTGQFVYCGKNA 93
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 129 bits (312), Expect = 4e-31
Identities = 58/85 (68%), Positives = 71/85 (83%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
GK A L VGNV+PVG MP+GTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKL
Sbjct: 90 GKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKL 149
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
PSGAKKV+PSS RG+VGIVAGGGR+
Sbjct: 150 PSGAKKVVPSSARGVVGIVAGGGRI 174
Score = 120 bits (289), Expect = 2e-28
Identities = 49/65 (75%), Positives = 59/65 (90%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KV
Sbjct: 175 DKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKV 234
Query: 689 GLIAA 703
GLIAA
Sbjct: 235 GLIAA 239
Score = 106 bits (254), Expect = 4e-24
Identities = 51/89 (57%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
RAQR+ +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+
Sbjct: 6 RAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRN 64
Query: 182 PYKFKTRKELFIAPEXS-TQANLFIGKES 265
PY ++T E F+A E T ++ GK +
Sbjct: 65 PYHYRTDVETFVATEGMYTGQFVYCGKNA 93
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2
Query: 572 PYVRGVAMNPVEHPHGGGNHQHIG 643
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 32.7 bits (71), Expect = 0.063
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 355 PLSPIFSSRLHTMVPLGIAPTGITFPTSRVAFFPNKQIG 239
P++P+F SR H PLG+ T FP F+ N IG
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFYGNLYIG 47
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.33
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -3
Query: 496 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 326
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 626 YHHREDALQGSWQHHVHMASSYV*PCTCGMPFQLSK*VCHTSTSSNNTDHAS 471
YH + G W ++ + SS + C CG QL + T SS N DH++
Sbjct: 180 YHATSNEFPGLWCNNECIPSS-IPNCACGAKRQLEFQILPTLISSMNIDHSA 230
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMN 598
+KPI K+K K +CW +RG N
Sbjct: 69 EKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 8 QRRGAGSVFVSHTKKRKGAPKLRSLD 85
+RRG+ +HTK+ K APK D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,921
Number of Sequences: 5004
Number of extensions: 72602
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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