Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120569.Seq
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 124 1e-28
07_01_1201 - 11419851-11419913,11420090-11420311 32 0.61
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 3.3
03_03_0091 - 14371528-14372661 29 4.3
03_06_0703 + 35632731-35633032,35633261-35633298,35634041-356341... 29 5.7
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 5.7
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 5.7
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 28 10.0
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 124 bits (298), Expect = 1e-28
Identities = 53/65 (81%), Positives = 58/65 (89%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
+KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KV
Sbjct: 176 EKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKV 235
Query: 689 GLIAA 703
GLIAA
Sbjct: 236 GLIAA 240
Score = 120 bits (288), Expect = 2e-27
Identities = 51/84 (60%), Positives = 69/84 (82%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
G++ATL +GNV+P+ ++P+G +VCN+E +GDRG ARASG++A VI HNPD +R+KL
Sbjct: 91 GRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKL 150
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGR 506
PSGAKK++PSS R M+G VAGGGR
Sbjct: 151 PSGAKKIVPSSCRAMIGQVAGGGR 174
Score = 115 bits (277), Expect = 4e-26
Identities = 52/75 (69%), Positives = 62/75 (82%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
RAQR+GAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V FR
Sbjct: 6 RAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRH 65
Query: 182 PYKFKTRKELFIAPE 226
P+++K +KELF+A E
Sbjct: 66 PFRYKHQKELFVAAE 80
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 31.9 bits (69), Expect = 0.61
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -3
Query: 502 PPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 326
PPP +P +P R+ P G +G P A R+P +P+F SR+
Sbjct: 15 PPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPSRV 72
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 3.3
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2
Query: 371 LWKLRHCDWT 400
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>03_03_0091 - 14371528-14372661
Length = 377
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = -3
Query: 499 PPATIPTMPLLLDGRTFLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 326
PPA P D P G+ T G+ P + A A A L+P+F +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313
Query: 325 HTMVPLGIAPTGITFP 278
M+ G+AP + P
Sbjct: 314 RAMLTAGMAPPSLEPP 329
>03_06_0703 +
35632731-35633032,35633261-35633298,35634041-35634132,
35639941-35640087
Length = 192
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = -3
Query: 433 SFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRLHTMVPLGIAPTGITFPTSRVAFFP 254
S +V A + A PE R+P + SS + +VPL AP+GIT P +
Sbjct: 21 SLPIVVRARRRVAVVTAAAPE---RKPAAAASSSN-YVVVPLDAAPSGITRPLVEILRDL 76
Query: 253 NKQI 242
NK++
Sbjct: 77 NKRV 80
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 5.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 402 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 313
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 584 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 691
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 246 CLLGKKATLEVGNVMPVGAMPKGTIVCNL 332
C +G K+ L GN VG PK +C L
Sbjct: 1755 CAVGSKSLLRTGNKQVVGDRPKIEEICKL 1783
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,020,997
Number of Sequences: 37544
Number of extensions: 530884
Number of successful extensions: 1597
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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