Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120569.Seq
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   6e-33
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       119   2e-27
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    40   0.002
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   33   0.27 
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.4  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_13953| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  138 bits (333), Expect = 6e-33
 Identities = 62/85 (72%), Positives = 74/85 (87%)
 Frame = +3

Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
           GKKA L++GN +PVG MP+GTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKL
Sbjct: 91  GKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKL 150

Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
           PSG KKV+PSSNR +VGIVAGGGR+
Sbjct: 151 PSGIKKVIPSSNRALVGIVAGGGRI 175



 Score =  131 bits (317), Expect = 6e-31
 Identities = 62/89 (69%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
 Frame = +2

Query: 2   RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
           R QR+GAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAVV FRD
Sbjct: 6   RGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAVVVFRD 65

Query: 182 PYKFKTRKELFIAPEXS-TQANLFIGKES 265
           PY++K RKELF+A E   T   ++ GK++
Sbjct: 66  PYRYKLRKELFVATEGMYTGQFIYCGKKA 94



 Score =  130 bits (315), Expect = 1e-30
 Identities = 57/65 (87%), Positives = 59/65 (90%)
 Frame = +2

Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
           DKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG  STV+R T AGRKV
Sbjct: 176 DKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDTPAGRKV 235

Query: 689 GLIAA 703
           GLIAA
Sbjct: 236 GLIAA 240


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  119 bits (287), Expect = 2e-27
 Identities = 53/75 (70%), Positives = 64/75 (85%)
 Frame = +3

Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
           GKKA L++GN +PVG MP+GTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKL
Sbjct: 49  GKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKL 108

Query: 435 PSGAKKVLPSSNRGM 479
           PSG KKV+PSSNR +
Sbjct: 109 PSGIKKVIPSSNRAL 123



 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 34/52 (65%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
 Frame = +2

Query: 113 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEXS-TQANLFIGKES 265
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A E   T   ++ GK++
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKA 52


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 27/77 (35%), Positives = 41/77 (53%)
 Frame = +3

Query: 264 ATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 443
           A L+ G+  P+  +P GT+V N+E   G   +LARA+G  A +I    +     V+LPS 
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167

Query: 444 AKKVLPSSNRGMVGIVA 494
            +K + S     VG V+
Sbjct: 168 VEKEVSSKCLASVGRVS 184


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 23/47 (48%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 559 FDLVLVVCPSSFQNRFVIRP--PPATIPTMPLLLDGRTFLAPDGSFT 425
           F L   V PSS QN F      P AT   + L+LD  TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159


>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -1

Query: 741 VSVLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 616
           V VL P + P+LR  +RP LRP   P+L    L    W  PP
Sbjct: 410 VGVLHPMLRPMLRPMLRPMLRPMLRPMLR-PMLQYKLWCQPP 450


>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 494 WRWTYDKPILKAG-RAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHI 640
           W W+  + + KA  R+YH   + R     + GV  NP   P G  N  H+
Sbjct: 530 WTWSLVQTVGKAPTRSYHSCTLYRGEMWVIGGVYPNPDPQPDGCSNDVHV 579


>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 24/94 (25%), Positives = 40/94 (42%)
 Frame = -1

Query: 753 VSFFVSVLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP*GCSTGFMATPRTY 574
           V  F+ +   +I P     IRP  +   V L  V  + +  WLP     +   +  P  Y
Sbjct: 204 VIIFIKLRQRKIKPQPNR-IRPRDKELGVALFIVTVVSLLTWLPDAVVLNLDSVLAPAQY 262

Query: 573 GQQLRLTLYLWYALPAFKIGLSYVHLQQQYRPCL 472
              +R TL+L Y+  +F   + Y++    +R  L
Sbjct: 263 KHAVRSTLFLRYS-NSFVNPIVYIYRLPTFRGAL 295


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 360  LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 488
            +AR +G+F   T +    D  RTR   P   KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 279 GNVMPVGAMPKGTIVCNLEEKMGDRGRLAR-ASGNFATVIG 398
           G+  PV  +P+G  +C   + +G R   AR   G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777


>SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 735 VLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 616
           +L P + P+LR  +RP LRP   P+L  +      W  PP
Sbjct: 1   MLRPMLRPMLRPMLRPMLRPMLRPMLQYKL-----WCQPP 35


>SB_13953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +3

Query: 177 AIHTSSRQGRSS------SLLPKXLHRPICLLGKKATLEVGNVMPVGAMPKGTIV 323
           A H + +QG+SS      SLL   + + IC         VG V+P G + K  IV
Sbjct: 199 AEHQAKKQGKSSDGKTKRSLLGDEVIKTICFPAMTVQEFVGEVLPTGILKKSEIV 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,862,335
Number of Sequences: 59808
Number of extensions: 590025
Number of successful extensions: 1500
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)