Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120569.Seq
         (804 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...   149   7e-38
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    25   3.6  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    25   3.6  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    25   3.6  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         24   6.3  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         24   6.3  

>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score =  149 bits (362), Expect = 7e-38
 Identities = 66/85 (77%), Positives = 78/85 (91%)
 Frame = +3

Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
           G++A L++GNV+P+G MP+GTIVCNLEEK GDRG+LAR SGN+A+VI HNPD KRTRVKL
Sbjct: 91  GRRAQLQIGNVIPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKL 150

Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
           PSGAKKVLPS+NR MVGIVAGGGR+
Sbjct: 151 PSGAKKVLPSANRAMVGIVAGGGRI 175



 Score =  140 bits (338), Expect = 6e-35
 Identities = 62/65 (95%), Positives = 62/65 (95%)
 Frame = +2

Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
           DKPILKAGRAYHKYKVKRNCWP VRGVAMNPVEHPHGGGNHQHIGKASTVKRGT  GRKV
Sbjct: 176 DKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKV 235

Query: 689 GLIAA 703
           GLIAA
Sbjct: 236 GLIAA 240



 Score =  132 bits (319), Expect = 1e-32
 Identities = 60/75 (80%), Positives = 67/75 (89%)
 Frame = +2

Query: 2   RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
           RAQR+GAGSVF +HTKKRKG PKLR LDYAERHGY+KGVVK II DPGRGAPLAVV+FRD
Sbjct: 6   RAQRKGAGSVFRAHTKKRKGQPKLRHLDYAERHGYLKGVVKQIIQDPGRGAPLAVVNFRD 65

Query: 182 PYKFKTRKELFIAPE 226
           PY+F+  K+LFIA E
Sbjct: 66  PYRFRLSKQLFIAAE 80


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 464 KQQRHGRYCCWRWTY 508
           +QQ+HG++CC R ++
Sbjct: 280 QQQQHGQHCCCRGSH 294


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 95  RHGYIKGVVKDIIHDP 142
           R+  +K ++KDI+HDP
Sbjct: 737 RYTMLKDMIKDIMHDP 752


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 95  RHGYIKGVVKDIIHDP 142
           R+  +K ++KDI+HDP
Sbjct: 737 RYTMLKDMIKDIMHDP 752


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 587 HHVHMASSYV*PCTCGMPFQLSK*VCHTSTSSNNTDHASVA 465
           HH H + S     T  M        C T+TS+ +T  AS A
Sbjct: 17  HHHHSSQSPTSTTTVTMATASPVPACTTTTSTTSTSGASAA 57


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 587 HHVHMASSYV*PCTCGMPFQLSK*VCHTSTSSNNTDHASVA 465
           HH H + S     T  M        C T+TS+ +T  AS A
Sbjct: 17  HHHHSSQSPTSTTTVTMATASPVPACTTTTSTTSTSGASAA 57


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 869,263
Number of Sequences: 2352
Number of extensions: 19871
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84823812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)