Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120569.Seq
(804 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8 pr... 142 2e-33
BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8 pr... 142 2e-33
BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8 pr... 142 2e-33
Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8 prot... 141 2e-33
CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein. 141 2e-33
BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8 pr... 141 2e-33
BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8 pr... 141 2e-33
BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein. 141 2e-33
AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8 pr... 141 2e-33
AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8 pr... 127 5e-29
BC020212-1|AAH20212.1| 305|Homo sapiens mitochondrial ribosomal... 33 1.2
BC013685-1|AAH13685.1| 305|Homo sapiens mitochondrial ribosomal... 33 1.2
AL355385-2|CAI13780.1| 302|Homo sapiens protein ( Human DNA seq... 33 1.2
AF132956-1|AAD27731.1| 353|Homo sapiens CGI-22 protein protein. 33 1.2
BC071733-1|AAH71733.1| 457|Homo sapiens retinoic acid receptor,... 31 3.7
AF283809-1|AAF87249.1| 54|Homo sapiens retinoic acid receptor ... 31 3.7
>BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 142 bits (343), Expect = 2e-33
Identities = 64/85 (75%), Positives = 76/85 (89%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
GKKA L VGNV+PVG MP+GTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKL
Sbjct: 91 GKKAQLNVGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKL 150
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
PSG+KKV+ S+NR +VG+VAGGGR+
Sbjct: 151 PSGSKKVISSANRAVVGVVAGGGRI 175
Score = 128 bits (309), Expect = 2e-29
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKPILKAGRAYHKYK KRNCWP VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKV
Sbjct: 176 DKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKV 235
Query: 689 GLIAA 703
GLIAA
Sbjct: 236 GLIAA 240
Score = 127 bits (306), Expect = 5e-29
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
R QR+GAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRD
Sbjct: 6 RGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRD 65
Query: 182 PYKFKTRKELFIAPE-XSTQANLFIGKES 265
PY+FK R ELFIA E T ++ GK++
Sbjct: 66 PYRFKKRTELFIAAEGIHTGQFVYCGKKA 94
>BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 142 bits (343), Expect = 2e-33
Identities = 64/85 (75%), Positives = 76/85 (89%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
GKKA L VGNV+PVG MP+GTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKL
Sbjct: 91 GKKAQLNVGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKL 150
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
PSG+KKV+ S+NR +VG+VAGGGR+
Sbjct: 151 PSGSKKVISSANRAVVGVVAGGGRI 175
Score = 128 bits (309), Expect = 2e-29
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKPILKAGRAYHKYK KRNCWP VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKV
Sbjct: 176 DKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKV 235
Query: 689 GLIAA 703
GLIAA
Sbjct: 236 GLIAA 240
Score = 127 bits (306), Expect = 5e-29
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
R QR+GAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRD
Sbjct: 6 RGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRD 65
Query: 182 PYKFKTRKELFIAPE-XSTQANLFIGKES 265
PY+FK R ELFIA E T ++ GK++
Sbjct: 66 PYRFKKRTELFIAAEGIHTGQFVYCGKKA 94
>BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 142 bits (343), Expect = 2e-33
Identities = 64/85 (75%), Positives = 76/85 (89%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
GKKA L VGNV+PVG MP+GTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKL
Sbjct: 91 GKKAQLNVGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKL 150
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
PSG+KKV+ S+NR +VG+VAGGGR+
Sbjct: 151 PSGSKKVISSANRAVVGVVAGGGRI 175
Score = 128 bits (309), Expect = 2e-29
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKPILKAGRAYHKYK KRNCWP VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKV
Sbjct: 176 DKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKV 235
Query: 689 GLIAA 703
GLIAA
Sbjct: 236 GLIAA 240
Score = 127 bits (306), Expect = 5e-29
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
R QR+GAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRD
Sbjct: 6 RGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRD 65
Query: 182 PYKFKTRKELFIAPE-XSTQANLFIGKES 265
PY+FK R ELFIA E T ++ GK++
Sbjct: 66 PYRFKKRTELFIAAEGIHTGQFVYCGKKA 94
>Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 141 bits (342), Expect = 2e-33
Identities = 63/85 (74%), Positives = 76/85 (89%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
GKKA L +GNV+PVG MP+GTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKL
Sbjct: 91 GKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKL 150
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
PSG+KKV+ S+NR +VG+VAGGGR+
Sbjct: 151 PSGSKKVISSANRAVVGVVAGGGRI 175
Score = 128 bits (309), Expect = 2e-29
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKPILKAGRAYHKYK KRNCWP VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKV
Sbjct: 176 DKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKV 235
Query: 689 GLIAA 703
GLIAA
Sbjct: 236 GLIAA 240
Score = 127 bits (306), Expect = 5e-29
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
R QR+GAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRD
Sbjct: 6 RGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRD 65
Query: 182 PYKFKTRKELFIAPE-XSTQANLFIGKES 265
PY+FK R ELFIA E T ++ GK++
Sbjct: 66 PYRFKKRTELFIAAEGIHTGQFVYCGKKA 94
>CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein.
Length = 257
Score = 141 bits (342), Expect = 2e-33
Identities = 63/85 (74%), Positives = 76/85 (89%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
GKKA L +GNV+PVG MP+GTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKL
Sbjct: 91 GKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKL 150
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
PSG+KKV+ S+NR +VG+VAGGGR+
Sbjct: 151 PSGSKKVISSANRAVVGVVAGGGRI 175
Score = 128 bits (309), Expect = 2e-29
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKPILKAGRAYHKYK KRNCWP VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKV
Sbjct: 176 DKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKV 235
Query: 689 GLIAA 703
GLIAA
Sbjct: 236 GLIAA 240
Score = 127 bits (306), Expect = 5e-29
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
R QR+GAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRD
Sbjct: 6 RGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRD 65
Query: 182 PYKFKTRKELFIAPE-XSTQANLFIGKES 265
PY+FK R ELFIA E T ++ GK++
Sbjct: 66 PYRFKKRTELFIAAEGIHTGQFVYCGKKA 94
>BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 141 bits (342), Expect = 2e-33
Identities = 63/85 (74%), Positives = 76/85 (89%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
GKKA L +GNV+PVG MP+GTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKL
Sbjct: 91 GKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKL 150
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
PSG+KKV+ S+NR +VG+VAGGGR+
Sbjct: 151 PSGSKKVISSANRAVVGVVAGGGRI 175
Score = 128 bits (309), Expect = 2e-29
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKPILKAGRAYHKYK KRNCWP VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKV
Sbjct: 176 DKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKV 235
Query: 689 GLIAA 703
GLIAA
Sbjct: 236 GLIAA 240
Score = 127 bits (306), Expect = 5e-29
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
R QR+GAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRD
Sbjct: 6 RGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRD 65
Query: 182 PYKFKTRKELFIAPE-XSTQANLFIGKES 265
PY+FK R ELFIA E T ++ GK++
Sbjct: 66 PYRFKKRTELFIAAEGIHTGQFVYCGKKA 94
>BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 141 bits (342), Expect = 2e-33
Identities = 63/85 (74%), Positives = 76/85 (89%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
GKKA L +GNV+PVG MP+GTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKL
Sbjct: 91 GKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKL 150
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
PSG+KKV+ S+NR +VG+VAGGGR+
Sbjct: 151 PSGSKKVISSANRAVVGVVAGGGRI 175
Score = 128 bits (309), Expect = 2e-29
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKPILKAGRAYHKYK KRNCWP VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKV
Sbjct: 176 DKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKV 235
Query: 689 GLIAA 703
GLIAA
Sbjct: 236 GLIAA 240
Score = 127 bits (306), Expect = 5e-29
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
R QR+GAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRD
Sbjct: 6 RGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRD 65
Query: 182 PYKFKTRKELFIAPE-XSTQANLFIGKES 265
PY+FK R ELFIA E T ++ GK++
Sbjct: 66 PYRFKKRTELFIAAEGIHTGQFVYCGKKA 94
>BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein.
Length = 211
Score = 141 bits (342), Expect = 2e-33
Identities = 63/85 (74%), Positives = 76/85 (89%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
GKKA L +GNV+PVG MP+GTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKL
Sbjct: 45 GKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKL 104
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
PSG+KKV+ S+NR +VG+VAGGGR+
Sbjct: 105 PSGSKKVISSANRAVVGVVAGGGRI 129
Score = 128 bits (309), Expect = 2e-29
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKPILKAGRAYHKYK KRNCWP VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKV
Sbjct: 130 DKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKV 189
Query: 689 GLIAA 703
GLIAA
Sbjct: 190 GLIAA 194
Score = 62.9 bits (146), Expect = 1e-09
Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +2
Query: 125 DIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE-XSTQANLFIGKES 265
DIIHDPGRGAPLA V FRDPY+FK R ELFIA E T ++ GK++
Sbjct: 1 DIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKA 48
>AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 141 bits (342), Expect = 2e-33
Identities = 63/85 (74%), Positives = 76/85 (89%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
GKKA L +GNV+PVG MP+GTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKL
Sbjct: 91 GKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKL 150
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRM 509
PSG+KKV+ S+NR +VG+VAGGGR+
Sbjct: 151 PSGSKKVISSANRAVVGVVAGGGRI 175
Score = 128 bits (309), Expect = 2e-29
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKPILKAGRAYHKYK KRNCWP VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKV
Sbjct: 176 DKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKV 235
Query: 689 GLIAA 703
GLIAA
Sbjct: 236 GLIAA 240
Score = 127 bits (306), Expect = 5e-29
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
R QR+GAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRD
Sbjct: 6 RGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRD 65
Query: 182 PYKFKTRKELFIAPE-XSTQANLFIGKES 265
PY+FK R ELFIA E T ++ GK++
Sbjct: 66 PYRFKKRTELFIAAEGIHTGQFVYCGKKA 94
>AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8
protein.
Length = 130
Score = 127 bits (306), Expect = 5e-29
Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
R QR+GAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRD
Sbjct: 2 RGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRD 61
Query: 182 PYKFKTRKELFIAPE-XSTQANLFIGKES 265
PY+FK R ELFIA E T ++ GK++
Sbjct: 62 PYRFKKRTELFIAAEGIHTGQFVYCGKKA 90
Score = 77.0 bits (181), Expect = 7e-14
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFA 386
GKKA L +GNV+PVG MP+GTIVC LEEK GDRG+LARASGN+A
Sbjct: 87 GKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYA 130
>BC020212-1|AAH20212.1| 305|Homo sapiens mitochondrial ribosomal
protein L2 protein.
Length = 305
Score = 33.1 bits (72), Expect = 1.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 279 GNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVI 395
G+ P+GA+P GT++ N+E + G + RA+G ++
Sbjct: 179 GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLL 217
>BC013685-1|AAH13685.1| 305|Homo sapiens mitochondrial ribosomal
protein L2 protein.
Length = 305
Score = 33.1 bits (72), Expect = 1.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 279 GNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVI 395
G+ P+GA+P GT++ N+E + G + RA+G ++
Sbjct: 179 GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLL 217
>AL355385-2|CAI13780.1| 302|Homo sapiens protein ( Human DNA
sequence from clone RP11-387M24 on chromosome 6 Contains
the 5' end of a gene for a novel protein (KIAA0076
KIAA0708), the ).
Length = 302
Score = 33.1 bits (72), Expect = 1.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 279 GNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVI 395
G+ P+GA+P GT++ N+E + G + RA+G ++
Sbjct: 176 GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLL 214
>AF132956-1|AAD27731.1| 353|Homo sapiens CGI-22 protein protein.
Length = 353
Score = 33.1 bits (72), Expect = 1.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 279 GNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVI 395
G+ P+GA+P GT++ N+E + G + RA+G ++
Sbjct: 179 GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLL 217
>BC071733-1|AAH71733.1| 457|Homo sapiens retinoic acid receptor,
alpha protein.
Length = 457
Score = 31.5 bits (68), Expect = 3.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 234 VEXSGAMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 109
VE G + FLV++ Y +R C KG P PG + L TPL
Sbjct: 5 VEVGGPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48
>AF283809-1|AAF87249.1| 54|Homo sapiens retinoic acid receptor
alpha 2 isoform protein.
Length = 54
Score = 31.5 bits (68), Expect = 3.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 234 VEXSGAMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 109
VE G + FLV++ Y +R C KG P PG + L TPL
Sbjct: 5 VEVGGPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,237,608
Number of Sequences: 237096
Number of extensions: 3005365
Number of successful extensions: 6126
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6126
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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