Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120569.Seq
(804 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 132 2e-31
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 36 0.034
Z78198-6|CAB01572.2| 848|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z83238-4|CAB05795.1| 341|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical p... 28 6.8
Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical p... 28 9.0
Z74042-7|CAA98532.1| 155|Caenorhabditis elegans Hypothetical pr... 28 9.0
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 132 bits (320), Expect = 2e-31
Identities = 55/84 (65%), Positives = 72/84 (85%)
Frame = +3
Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
G KA +++GN++PVG +P+GT +CN+E K GDRG +ARASGN+ATVI HNPD K+TR++L
Sbjct: 91 GAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRL 150
Query: 435 PSGAKKVLPSSNRGMVGIVAGGGR 506
PSGAKKV+ S NR M+G+VAGGGR
Sbjct: 151 PSGAKKVVQSVNRAMIGLVAGGGR 174
Score = 124 bits (300), Expect = 6e-29
Identities = 54/65 (83%), Positives = 58/65 (89%)
Frame = +2
Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
DKP+LKAGR+YHKYK KRN WP VRGVAMNPVEHPHGGGNHQHIG STV+R SAG+KV
Sbjct: 176 DKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKV 235
Query: 689 GLIAA 703
GLIAA
Sbjct: 236 GLIAA 240
Score = 124 bits (298), Expect = 1e-28
Identities = 55/75 (73%), Positives = 62/75 (82%)
Frame = +2
Query: 2 RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
R QR+GAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++ FRD
Sbjct: 6 RIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRD 65
Query: 182 PYKFKTRKELFIAPE 226
PYK+KT K +A E
Sbjct: 66 PYKYKTVKTTVVAAE 80
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 35.9 bits (79), Expect = 0.034
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 279 GNVMPVGAMPKGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 437
GN P+G++ GT++ ++E D +A+G AT++ H D T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211
>Z78198-6|CAB01572.2| 848|Caenorhabditis elegans Hypothetical
protein F55C5.7 protein.
Length = 848
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 437 VWSQEGSAIKQQRHGRYCCWRWTYDKPILKAGRAYHKYKVK 559
+ S + S I+++RH C + +D +L+ R H++ K
Sbjct: 109 IGSSDPSVIQERRHAIEACLNFVFDSEVLRKSRLLHEFVEK 149
>Z83238-4|CAB05795.1| 341|Caenorhabditis elegans Hypothetical
protein T08G3.5 protein.
Length = 341
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 98 HGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEXSTQANLFIGKES 265
HG +V ++H P R A L ++ + K T ++F+ + Q + + K S
Sbjct: 285 HGLFSTIVMLVVHKPYRQATLQILKIKRIEKIGTANKVFLVFQEKKQVSKSMKKSS 340
>Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 98 HGYIKGVVKDIIHDPGRGAPLAVVHFR 178
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 98 HGYIKGVVKDIIHDPGRGAPLAVVHFR 178
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 393 IGHNPDAKRTRVKLPSGAKKVL 458
IGH D +RTR LP+G KKVL
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVL 77
>Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical
protein Y57G11C.44 protein.
Length = 155
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 35 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 160
+S ++RK + LD+++ G K ++KDI +D + P+
Sbjct: 1 MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42
>Z74042-7|CAA98532.1| 155|Caenorhabditis elegans Hypothetical
protein T11F9.8 protein.
Length = 155
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 430 SYRLEPRRFCHQATEAWSVLLLEVDV*QTYFESWKGIPQV 549
S R EP QATE W + + +D Y E+ + +PQV
Sbjct: 58 SQRAEPGA-TFQATETWQNVTISLDAGYRYLENNQKLPQV 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,724,778
Number of Sequences: 27780
Number of extensions: 425141
Number of successful extensions: 1081
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -