Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120569.Seq
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   125   4e-29
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   124   7e-29
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             123   2e-28
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim...    49   4e-06
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim...    49   4e-06
At4g14250.1 68417.m02198 UBX domain-containing protein low simil...    46   4e-05
At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family prote...    31   1.2  
At2g22730.1 68415.m02694 transporter-related low similarity to s...    30   2.1  
At1g44130.1 68414.m05097 nucellin protein, putative similar to n...    29   3.6  
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)...    29   4.8  

>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  125 bits (301), Expect = 4e-29
 Identities = 56/91 (61%), Positives = 73/91 (80%)
 Frame = +3

Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
           GKKA L VGNV+P+G++P+G ++CN+E  +GDRG LARASG++A VI HNP++  TRVKL
Sbjct: 92  GKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKL 151

Query: 435 PSGAKKVLPSSNRGMVGIVAGGGRMTNLF*K 527
           PSG+KK+LPS+ R M+G VAGGGR    F K
Sbjct: 152 PSGSKKILPSACRAMIGQVAGGGRTEKPFLK 182



 Score =  124 bits (298), Expect = 9e-29
 Identities = 54/65 (83%), Positives = 56/65 (86%)
 Frame = +2

Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
           +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R  SAG KV
Sbjct: 177 EKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKV 236

Query: 689 GLIAA 703
           G IAA
Sbjct: 237 GQIAA 241



 Score =  113 bits (272), Expect = 1e-25
 Identities = 56/91 (61%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
 Frame = +2

Query: 2   RAQRRGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 178
           RAQR+GA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA V FR
Sbjct: 6   RAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFR 65

Query: 179 DPYKFKTRKELFIAPEXS-TQANLFIGKESN 268
            P+++  +KELF+A E   T   L+ GK++N
Sbjct: 66  HPFRYMKQKELFVAAEGMYTGQYLYCGKKAN 96


>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  124 bits (299), Expect = 7e-29
 Identities = 53/65 (81%), Positives = 58/65 (89%)
 Frame = +2

Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
           +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KV
Sbjct: 176 EKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKV 235

Query: 689 GLIAA 703
           GLIAA
Sbjct: 236 GLIAA 240



 Score =  118 bits (284), Expect = 5e-27
 Identities = 57/89 (64%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
 Frame = +2

Query: 2   RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
           RAQR+GAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR 
Sbjct: 6   RAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRH 65

Query: 182 PYKFKTRKELFIAPEXS-TQANLFIGKES 265
           P++FK +KELF+A E   T   L+ GK++
Sbjct: 66  PFRFKKQKELFVAAEGMYTGQFLYCGKKA 94



 Score =  118 bits (284), Expect = 5e-27
 Identities = 51/84 (60%), Positives = 68/84 (80%)
 Frame = +3

Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
           GKKATL VGNV+P+ ++P+G ++CN+E  +GDRG  ARASG++A VI HNPD   +R+KL
Sbjct: 91  GKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKL 150

Query: 435 PSGAKKVLPSSNRGMVGIVAGGGR 506
           PSG+KK++PS  R M+G VAGGGR
Sbjct: 151 PSGSKKIVPSGCRAMIGQVAGGGR 174


>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  123 bits (296), Expect = 2e-28
 Identities = 54/84 (64%), Positives = 70/84 (83%)
 Frame = +3

Query: 255 GKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKL 434
           GKKATL VGNV+P+ ++P+G +VCN+E  +GDRG LARASG++A VI HNPD+  TR+KL
Sbjct: 91  GKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKL 150

Query: 435 PSGAKKVLPSSNRGMVGIVAGGGR 506
           PSG+KK++PS  R M+G VAGGGR
Sbjct: 151 PSGSKKIVPSGCRAMIGQVAGGGR 174



 Score =  120 bits (288), Expect = 1e-27
 Identities = 52/65 (80%), Positives = 57/65 (87%)
 Frame = +2

Query: 509 DKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 688
           +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KV
Sbjct: 176 EKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKV 235

Query: 689 GLIAA 703
           GLIAA
Sbjct: 236 GLIAA 240



 Score =  118 bits (284), Expect = 5e-27
 Identities = 57/89 (64%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
 Frame = +2

Query: 2   RAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRD 181
           RAQR+GAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR 
Sbjct: 6   RAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRH 65

Query: 182 PYKFKTRKELFIAPEXS-TQANLFIGKES 265
           P++FK +KELF+A E   T   L+ GK++
Sbjct: 66  PFRFKKQKELFVAAEGMYTGQFLYCGKKA 94


>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +3

Query: 276 VGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 455
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 456 LPSSNRGMVGIVA 494
           + +  R  +G V+
Sbjct: 118 INAKCRATIGTVS 130



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
 Frame = +2

Query: 548 YKVKRNCW----PYVRGVAMNPVEHPHGGG 625
           YK  ++ W    P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169


>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +3

Query: 276 VGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 455
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 456 LPSSNRGMVGIVA 494
           + +  R  +G V+
Sbjct: 118 INAKCRATIGTVS 130



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
 Frame = +2

Query: 548 YKVKRNCW----PYVRGVAMNPVEHPHGGG 625
           YK  ++ W    P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169


>At4g14250.1 68417.m02198 UBX domain-containing protein low
           similarity to 60S ribosomal protein L2 [Nicotiana
           tabacum] GI:9230281; contains Pfam profile PF00789: UBX
           domain
          Length = 724

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +2

Query: 545 KYKVKRNCWPYVRGVAM-NPVEHPHGG 622
           K  +KRN W  VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437


>At4g36610.1 68417.m05196 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas fluorescens] GI:1871461; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 317

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +3

Query: 246 CLLGKKATLEVGNVMPVGAMPKGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTR 425
           CL+     L V   +PVG    G +   + E   D  R    SG+  T+     +A   R
Sbjct: 116 CLVKGLRILGVDKFVPVGFSYGGMVAFKIAEAYPDMVRAIVVSGSIPTMTDTINEASLNR 175

Query: 426 VKLPSGAKKVLPSSNRGM 479
           +   S    +LP+S  G+
Sbjct: 176 LGFSSSTDLLLPTSVTGL 193


>At2g22730.1 68415.m02694 transporter-related low similarity to
           spinster membrane proteins from [Drosophila
           melanogaster] GI:12003974, GI:12003976, GI:12003972,
           GI:12003970; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 510

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
 Frame = -3

Query: 559 FDLVLVVCP--SSFQNRFVIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITV 386
           F  V ++C    +    F++    ATIP    LL G TFL     FT   L S    I +
Sbjct: 337 FGAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIAL 396

Query: 385 AKFPEARARRPLSPIFSSRLHTMVPLGIAPTGITFPTSRVAFF 257
               E       +P+    LH + P  + P  +   T  +  F
Sbjct: 397 FALGELLVFATQAPVNYVCLHCVKP-SLRPLSMAISTVAIHIF 438


>At1g44130.1 68414.m05097 nucellin protein, putative similar to
           nucellin GI:2290202 from [Hordeum vulgare]
          Length = 405

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 142 W*RCTFGC--CTLPRSIQVQDKEGALHCSRXLYTGQFVYWERK 264
           W +C   C  CTLP ++Q + K   + CS  + T   ++W  K
Sbjct: 74  WVQCDAPCSGCTLPPNLQYKPKGNIIPCSNPICTA--LHWPNK 114


>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to  cDNA putative transcription factor
           (MYB82) mRNA, partial cds GI:3941515
          Length = 201

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 521 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 682
           ++  R   K  VKR  W     + +      HG GN   I + S +KRG  + R
Sbjct: 1   MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,872,456
Number of Sequences: 28952
Number of extensions: 402150
Number of successful extensions: 1128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)