Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120568.Seq
(780 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 96 8e-19
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 48 3e-04
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 48 3e-04
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 46 0.001
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 44 0.004
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 40 0.070
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 40 0.070
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 40 0.092
UniRef50_Q16SQ5 Cluster: Putative uncharacterized protein; n=1; ... 39 0.16
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 36 0.86
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 36 1.1
UniRef50_A7EJZ6 Cluster: Putative uncharacterized protein; n=1; ... 36 1.5
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 36 1.5
UniRef50_UPI000023F3F3 Cluster: hypothetical protein FG08939.1; ... 35 2.0
UniRef50_UPI00015B4152 Cluster: PREDICTED: hypothetical protein;... 34 4.6
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 96.3 bits (229), Expect = 8e-19
Identities = 45/45 (100%), Positives = 45/45 (100%)
Frame = +2
Query: 374 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSK 508
MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSK
Sbjct: 1 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSK 45
Score = 91.1 bits (216), Expect = 3e-17
Identities = 42/45 (93%), Positives = 43/45 (95%)
Frame = +1
Query: 568 FTNLVDTLVNTIHRDAITAPLVETAIRNFRHKLQLYPYQVNSKLM 702
FTNLVDTL NTIHRDAITAPLVETAI NFRHKLQLYPYQVNSKL+
Sbjct: 3 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLI 47
Score = 78.6 bits (185), Expect = 2e-13
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +2
Query: 47 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 157
ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL+
Sbjct: 11 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLI 47
Score = 65.7 bits (153), Expect = 1e-09
Identities = 32/36 (88%), Positives = 33/36 (91%)
Frame = +1
Query: 256 AITAPLVETAISNFRHKLQLYPYQVNSKLM*NLNPL 363
AITAPLVETAISNFRHKLQLYPYQVNSKL+ LN L
Sbjct: 18 AITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQL 53
Score = 33.1 bits (72), Expect = 8.0
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 212 FTNLVDTLANTIHR 253
FTNLVDTLANTIHR
Sbjct: 3 FTNLVDTLANTIHR 16
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 48.0 bits (109), Expect = 3e-04
Identities = 19/42 (45%), Positives = 32/42 (76%)
Frame = +2
Query: 374 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 499
MAF +D L++T HRD+I+APL+++++S + L+L+PY V
Sbjct: 1 MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTV 42
Score = 42.7 bits (96), Expect = 0.010
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = +1
Query: 568 FTNLVDTLVNTIHRDAITAPLVETAIRNFRHKLQLYPYQVNSKLM 702
F +D L +T HRD+I+APL+++++ + L+L+PY V +L+
Sbjct: 3 FQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELV 47
Score = 41.1 bits (92), Expect = 0.030
Identities = 15/37 (40%), Positives = 29/37 (78%)
Frame = +2
Query: 47 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 157
++T HRD+I+APL+++++S + L+L+PY V +L+
Sbjct: 11 SSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELV 47
Score = 33.5 bits (73), Expect = 6.1
Identities = 13/34 (38%), Positives = 25/34 (73%)
Frame = +1
Query: 256 AITAPLVETAISNFRHKLQLYPYQVNSKLM*NLN 357
+I+APL+++++S + L+L+PY V +L+ LN
Sbjct: 18 SISAPLLDSSVSQLQSSLELFPYTVPKELVPQLN 51
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 47.6 bits (108), Expect = 3e-04
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = +2
Query: 374 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSK 508
MAF + + L++T+HRD + APL+E+ R L+LYP+ +N++
Sbjct: 1 MAFQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAE 45
Score = 43.2 bits (97), Expect = 0.007
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +1
Query: 568 FTNLVDTLVNTIHRDAITAPLVETAIRNFRHKLQLYPYQVNSK 696
F + + L +T+HRD + APL+E+ + R L+LYP+ +N++
Sbjct: 3 FQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAE 45
Score = 40.3 bits (90), Expect = 0.053
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +2
Query: 47 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSK 151
++T+HRD + APL+E+ R L+LYP+ +N++
Sbjct: 11 SSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAE 45
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/47 (44%), Positives = 26/47 (55%)
Frame = +2
Query: 359 PYSSSMAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 499
P S LV+ L T+HRD + +PLVE A R LQLYPY +
Sbjct: 127 PALSGGGLKELVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
Score = 43.6 bits (98), Expect = 0.006
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 577 LVDTLVNTIHRDAITAPLVETAIRNFRHKLQLYPYQV 687
LV+ L T+HRD + +PLVE A R LQLYPY +
Sbjct: 137 LVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
Score = 41.1 bits (92), Expect = 0.030
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +2
Query: 53 TIHRDAITAPLVETAISNFRHKLQLYPYQV 142
T+HRD + +PLVE A R LQLYPY +
Sbjct: 144 TVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = +2
Query: 386 NLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 499
++++TL++TIHRD I APL+ET S +R L+ +P+ V
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAV 63
Score = 40.7 bits (91), Expect = 0.040
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1
Query: 574 NLVDTLVNTIHRDAITAPLVETAIRNFRHKLQLYPYQV 687
++++TL +TIHRD I APL+ET +R L+ +P+ V
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAV 63
Score = 37.5 bits (83), Expect = 0.37
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 47 ANTIHRDAITAPLVETAISNFRHKLQLYPYQV 142
++TIHRD I APL+ET S +R L+ +P+ V
Sbjct: 32 SSTIHRDTIAAPLMETLASPYRDSLRDFPWAV 63
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 39.9 bits (89), Expect = 0.070
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 392 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 499
V++L T HRD ITAP+VE+ + R L+ YP+ +
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWSI 49
Score = 39.1 bits (87), Expect = 0.12
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 580 VDTLVNTIHRDAITAPLVETAIRNFRHKLQLYPYQV 687
V++L T HRD ITAP+VE+ R L+ YP+ +
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWSI 49
Score = 36.3 bits (80), Expect = 0.86
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 53 TIHRDAITAPLVETAISNFRHKLQLYPYQV 142
T HRD ITAP+VE+ + R L+ YP+ +
Sbjct: 20 TTHRDTITAPIVESLATPLRRSLERYPWSI 49
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 39.9 bits (89), Expect = 0.070
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 374 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 499
MAF +D LA T HRD P++E+ + + R +Q YP+ +
Sbjct: 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSI 42
Score = 35.9 bits (79), Expect = 1.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 568 FTNLVDTLVNTIHRDAITAPLVETAIRNFRHKLQLYPYQVNSKLM 702
F +D L T HRD P++E+ + + R +Q YP+ + +L+
Sbjct: 3 FQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELL 47
Score = 33.5 bits (73), Expect = 6.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 47 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 157
A T HRD P++E+ + + R +Q YP+ + +L+
Sbjct: 11 APTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELL 47
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 39.5 bits (88), Expect = 0.092
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 374 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 493
MAF + ++ L +T HRDA T P++ + + R L LYP+
Sbjct: 1 MAFQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
Score = 35.5 bits (78), Expect = 1.5
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 568 FTNLVDTLVNTIHRDAITAPLVETAIRNFRHKLQLYPY 681
F + ++ L +T HRDA T P++ + + R L LYP+
Sbjct: 3 FQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
>UniRef50_Q16SQ5 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 508
Score = 38.7 bits (86), Expect = 0.16
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 55 HPPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA*--HGFHQFSR 228
H + H P + +Q P + +T P K++ D ++ QL G A G H+ +
Sbjct: 199 HQQQLHQSEPQYQQMRQRPEETATPPPQLKYKWDDETDRHHQLASGSAASVVSGRHRINA 258
Query: 229 HSRQHHPPSAITAPLVETAIS 291
+R++H PS T P + S
Sbjct: 259 ETRRNHQPSFTTTPYAPPSTS 279
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle
virus|Rep: Replicase - Dulcamara mottle virus
Length = 1742
Score = 36.3 bits (80), Expect = 0.86
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +2
Query: 374 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 493
MAF + ++ L +T HRDA++ P++ + + + L+ YP+
Sbjct: 1 MAFQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPW 40
Score = 34.7 bits (76), Expect = 2.6
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +1
Query: 568 FTNLVDTLVNTIHRDAITAPLVETAIRNFRHKLQLYPY 681
F + ++ L +T HRDA++ P++ + +R + L+ YP+
Sbjct: 3 FQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPW 40
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 35.9 bits (79), Expect = 1.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 398 TLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKS*HKQPTKSAC 541
+LA T HRD I PL+E +R L YP+ + + + QP ++C
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPT---NLQPFLTSC 141
Score = 34.7 bits (76), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 586 TLVNTIHRDAITAPLVETAIRNFRHKLQLYPYQVNSKL 699
+L T HRD I PL+E +R L YP+ + + L
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNL 134
Score = 34.3 bits (75), Expect = 3.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 47 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKL 154
A T HRD I PL+E +R L YP+ + + L
Sbjct: 99 APTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNL 134
>UniRef50_A7EJZ6 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 695
Score = 35.5 bits (78), Expect = 1.5
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Frame = +1
Query: 55 HPPR--RHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA*HGFHQFSR 228
H P HN G Q F Q + L + KF+A N + + A H SR
Sbjct: 507 HTPNASNHNSYNQGGYAQSFNHQPANLALESKFRAPGKNASHAMITNLSIATHPRLNVSR 566
Query: 229 HSRQHHPPSA-ITAPLVETAISNFRHKLQLYP 321
H PPSA +T + + + + LQ+ P
Sbjct: 567 HFHMDLPPSATLTQQSITINLPSTHYYLQIKP 598
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 35.5 bits (78), Expect = 1.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 374 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQV 499
MAF +D LA+T H+D P++E+ + LQ YP+ V
Sbjct: 1 MAFQLALDALASTSHKDPSLHPVLESVHDSLTDSLQTYPWMV 42
>UniRef50_UPI000023F3F3 Cluster: hypothetical protein FG08939.1; n=1;
Gibberella zeae PH-1|Rep: hypothetical protein FG08939.1
- Gibberella zeae PH-1
Length = 2643
Score = 35.1 bits (77), Expect = 2.0
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +1
Query: 70 HNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA*HGFHQFSRHSRQHHP 249
H PS + + + +T I G F+ N+QS ++P F A + H RQH
Sbjct: 2064 HKSQPSQGKTEADKDKLTTSKILGAFKRSSKENRQSMVIPDFQAYQQHQMGAPHQRQHPQ 2123
Query: 250 PSAITAPLVETAISN 294
T E A S+
Sbjct: 2124 QHTTTQAPYEQAQSS 2138
>UniRef50_UPI00015B4152 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 246
Score = 33.9 bits (74), Expect = 4.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 40 LSRQHHPPRRHNGSP-SGNRHQQFPSQASTLPISGKFQAHDINNQQSQ 180
L + HH ++H GN+ QQ P Q + I + + +D+N+ Q Q
Sbjct: 22 LQQHHHQQQQHQDCDYRGNKKQQQPQQVESQMIGNQCEINDVNHMQQQ 69
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,101,745
Number of Sequences: 1657284
Number of extensions: 15774786
Number of successful extensions: 38947
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 26083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38908
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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