Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120568.Seq
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   4.0  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   5.3  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   9.2  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
 Frame = +2

Query: 284 PSAISVTSFNFTHIR*IPSSCKILIP-------YSSSMAFTNLVDTLANTIHRDAITAPL 442
           PS +S ++ NF     IP S   L+P       Y+ +     L      T+ RD   APL
Sbjct: 349 PSGLSASNSNFASSSFIPQSVPQLLPIYYQTIFYNGNYYLQQLPSASPPTMFRDHSFAPL 408

Query: 443 VETAI 457
           V  +I
Sbjct: 409 VSPSI 413


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = -2

Query: 596 LTRVSTKLVKAMLSAEARDKLTLLVVYV--MTWNLPDMGKVEACDGN 462
           L +V T++   ++  +A +KL++L  ++  +  N+PD G++  CD N
Sbjct: 157 LAKVGTEI--RVVGNDAAEKLSILAGWISRIDRNVPDYGELTYCDFN 201


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 581 TKLVKAMLSAEARDKLTLLVVY 516
           TKL K+MLS+E R K  L  +Y
Sbjct: 164 TKLTKSMLSSEKRSKNHLSKIY 185



 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 225 TKLVKAMLSAEARDKLTLLVVY 160
           TKL K+MLS+E R K  L  +Y
Sbjct: 164 TKLTKSMLSSEKRSKNHLSKIY 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,424
Number of Sequences: 5004
Number of extensions: 60771
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)