Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120568.Seq
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991     31   1.0  
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002...    28   7.2  
08_02_0795 + 21273453-21273752                                         28   9.6  

>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
          Length = 276

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/72 (29%), Positives = 26/72 (36%)
 Frame = +1

Query: 43  SRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA*HGFHQF 222
           S  H   +RH+  P G+ HQ      S     G FQ+      Q +  P           
Sbjct: 72  SSGHRESQRHHQQPPGS-HQHHRRSGSVASDPGDFQSKFAPPPQFRPSPSPSQYDHHSSD 130

Query: 223 SRHSRQHHPPSA 258
            RH   HHPP A
Sbjct: 131 HRHGHGHHPPHA 142


>03_06_0523 +
           34499533-34499705,34499808-34499917,34500037-34500224,
           34500984-34501451
          Length = 312

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 46  RQHHPPRRHNGSPSGNRHQQFPSQA 120
           R H PP  H   PS    Q+FP +A
Sbjct: 178 RHHEPPMSHKKFPSSAGEQRFPDRA 202


>08_02_0795 + 21273453-21273752
          Length = 99

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 284 AVSTRGAVMALGGWCWREC 228
           A  T  A  A GGW WR+C
Sbjct: 67  ACDTAAAAAAAGGWEWRDC 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,576,558
Number of Sequences: 37544
Number of extensions: 457859
Number of successful extensions: 1156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)