Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120568.Seq
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    28   8.6  

>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
 Frame = +1

Query: 43  SRQHH--PPRRHNGSPS------GNRHQQFPSQASTLPISGKFQAHDINNQQSQ 180
           +R HH  PPR HN   +      GNRHQ             + Q HD N  QSQ
Sbjct: 71  NRGHHHGPPRNHNQDRNRHRNHDGNRHQNQDRSRHHNQDRNRRQNHDRNRHQSQ 124


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
 Frame = +1

Query: 43   SRQHH--PPRRHNGSPS------GNRHQQFPSQASTLPISGKFQAHDINNQQSQ 180
            +R HH  PPR HN   +      GNRHQ             + Q HD N  QSQ
Sbjct: 915  NRGHHHGPPRNHNQDRNRHRNHDGNRHQNQDRSRHHNQDRNRRQNHDRNRHQSQ 968


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 205 HGFHQFSRHSRQHHPPSAITAPLVETAISNFRHKLQLYP 321
           H   Q     +QHHPP     P+ ET I +  H  Q  P
Sbjct: 94  HSSQQIQHPPQQHHPPPPSPPPVAET-IQHQPHPSQQQP 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,122
Number of Sequences: 27780
Number of extensions: 355395
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)